Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P17430_001 | Banana | plastid | 34.72 | 66.98 |
| GSMUA_Achr6P07100_001 | Banana | mitochondrion | 69.19 | 59.7 |
| OQU78759 | Sorghum | plastid | 54.03 | 58.47 |
| GSMUA_Achr2P20420_001 | Banana | nucleus | 58.68 | 57.42 |
| VIT_08s0007g02510.t01 | Wine grape | plastid | 59.41 | 52.15 |
| VIT_06s0080g01110.t01 | Wine grape | nucleus | 56.48 | 51.79 |
| TraesCS5B01G125100.1 | Wheat | cytosol | 55.99 | 51.58 |
| Os12t0158800-01 | Rice | nucleus | 56.23 | 51.57 |
| TraesCS5A01G125900.3 | Wheat | cytosol | 55.75 | 51.35 |
| TraesCS5D01G133600.1 | Wheat | cytosol | 55.5 | 51.13 |
| GSMUA_Achr10P... | Banana | nucleus, plastid | 54.03 | 50.23 |
| Os02t0537500-01 | Rice | mitochondrion | 58.19 | 50.11 |
| TraesCS6B01G233700.2 | Wheat | mitochondrion, plastid | 55.75 | 49.78 |
| TraesCS6D01G182600.1 | Wheat | mitochondrion, plastid | 55.5 | 49.56 |
| TraesCS6A01G195500.2 | Wheat | mitochondrion, plastid | 55.01 | 49.13 |
| PGSC0003DMT400042347 | Potato | plastid | 57.21 | 48.95 |
| KRH72218 | Soybean | nucleus | 55.75 | 48.72 |
| HORVU0Hr1G038470.7 | Barley | mitochondrion, plastid | 54.28 | 48.47 |
| Solyc01g007760.2.1 | Tomato | plastid | 56.72 | 48.43 |
| Zm00001d023465_P002 | Maize | cytosol | 53.79 | 48.35 |
| KRH25298 | Soybean | nucleus | 53.06 | 48.22 |
| Zm00001d050664_P002 | Maize | mitochondrion, plastid | 44.74 | 48.16 |
| KRH30372 | Soybean | nucleus | 54.03 | 48.04 |
| Os04t0416100-01 | Rice | nucleus | 37.41 | 47.96 |
| Solyc11g068800.1.1 | Tomato | mitochondrion, nucleus | 52.57 | 47.88 |
| KRH32815 | Soybean | nucleus | 54.52 | 47.85 |
| Zm00001d016737_P002 | Maize | mitochondrion, plastid | 53.79 | 47.21 |
| PGSC0003DMT400050512 | Potato | mitochondrion, nucleus | 52.08 | 47.02 |
| HORVU5Hr1G040190.4 | Barley | plastid | 55.5 | 47.0 |
| PGSC0003DMT400015188 | Potato | nucleus | 50.86 | 46.95 |
| CDX70990 | Canola | nucleus | 50.12 | 44.66 |
| CDX98588 | Canola | nucleus | 47.68 | 44.02 |
| CDX92373 | Canola | nucleus | 47.43 | 43.79 |
| TraesCS2B01G313600.2 | Wheat | nucleus | 48.9 | 43.76 |
| TraesCS2A01G297400.1 | Wheat | nucleus | 48.9 | 43.67 |
| Bra002398.1-P | Field mustard | nucleus | 47.19 | 43.57 |
| OQU85083 | Sorghum | mitochondrion, plastid | 50.12 | 43.52 |
| TraesCS2D01G295300.2 | Wheat | mitochondrion | 48.66 | 43.45 |
| AT5G22220.2 | Thale cress | cytosol | 49.63 | 43.28 |
| Zm00001d003755_P001 | Maize | nucleus | 38.63 | 43.05 |
| Bra006615.1-P | Field mustard | nucleus | 48.66 | 42.98 |
| CDX84581 | Canola | plastid | 47.68 | 42.03 |
| Bra023047.1-P | Field mustard | plastid | 48.17 | 42.0 |
| CDX84164 | Canola | plastid | 49.14 | 41.7 |
| Bra017268.1-P | Field mustard | plastid | 49.63 | 41.68 |
| Bra005305.1-P | Field mustard | plastid | 48.9 | 41.58 |
| CDY43755 | Canola | plastid | 49.63 | 41.51 |
| CDX88807 | Canola | cytosol | 48.9 | 41.41 |
| OQU81541 | Sorghum | nucleus | 45.72 | 40.92 |
| CDX79651 | Canola | plastid | 48.66 | 38.34 |
| GSMUA_Achr4P17950_001 | Banana | nucleus | 37.16 | 37.62 |
| CDX75078 | Canola | plastid | 48.9 | 37.45 |
| AT2G36010.2 | Thale cress | plastid | 44.99 | 35.8 |
| KRH26172 | Soybean | nucleus | 16.38 | 35.64 |
| HORVU2Hr1G073750.2 | Barley | plastid | 47.92 | 35.44 |
| PGSC0003DMT400013986 | Potato | cytosol | 7.09 | 29.59 |
| Solyc06g074010.2.1 | Tomato | nucleus | 51.1 | 24.68 |
Protein Annotations
| Gene3D:1.10.10.10 | MapMan:13.1.2.2 | MapMan:15.5.10 | ncoils:Coil | InterPro:E2F | InterPro:E2F-DP_heterodim |
| InterPro:E2F_CC-MB | InterPro:E2F_WHTH_DNA-bd_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005667 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 | EnsemblPlantsGene:GSMUA_Achr6G18220_001 | EnsemblPlants:GSMUA_Achr6P18220_001 | EnsemblPlants:GSMUA_Achr6T18220_001 |
| InterPro:IPR036388 | UniProt:M0T820 | PFAM:PF02319 | PFAM:PF16421 | PANTHER:PTHR12081 | PANTHER:PTHR12081:SF72 |
| SMART:SM01372 | SUPFAM:SSF144074 | SUPFAM:SSF46785 | UniParc:UPI0002969DCA | InterPro:WH-like_DNA-bd_sf | InterPro:WH_DNA-bd_sf |
Description
E2F family transcription factor protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18220_001]
Coordinates
chr6:+:12335914..12338669
Molecular Weight (calculated)
45424.9 Da
IEP (calculated)
4.875
GRAVY (calculated)
-0.484
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIGYKYCLF FKLRLYELKT SPGYAGANNA LLTPVTGKGG KTNGRSKAAK YNKSGPQTPM SNVGSASGNV LTPVGTCRYD SSLGLLTKRF ISLLKQAQDG
101: ILDLNNAAET LEVQKRRIYD ITNVLEGIGL IEKKLKNKIC WKGLDNARPG EVDDDLSVLQ AEIKKLALQE HGLDDRISKI QERLRVFSED ERNQRWLYVT
201: EDDIKGLPCF QNETLIAIKA PHGTTLEVPD PDEAGEYPQR RYRIVLRSTM GPIDVYLVSQ FEEKFEEMNS IETPLRLNPM ADSQTVENSM LAIATEESRR
301: KETEFKDQDC QRACPDISSS QDAGGGMMKI VPCDVDTDAD YWLLSESGVS ITDMWKTSPE VQWDRICAFS TDDFVTSGAG TPRPPAPTSG VIDPLTQTLL
401: GNKCRADNL
101: ILDLNNAAET LEVQKRRIYD ITNVLEGIGL IEKKLKNKIC WKGLDNARPG EVDDDLSVLQ AEIKKLALQE HGLDDRISKI QERLRVFSED ERNQRWLYVT
201: EDDIKGLPCF QNETLIAIKA PHGTTLEVPD PDEAGEYPQR RYRIVLRSTM GPIDVYLVSQ FEEKFEEMNS IETPLRLNPM ADSQTVENSM LAIATEESRR
301: KETEFKDQDC QRACPDISSS QDAGGGMMKI VPCDVDTDAD YWLLSESGVS ITDMWKTSPE VQWDRICAFS TDDFVTSGAG TPRPPAPTSG VIDPLTQTLL
401: GNKCRADNL
001: MSEEVPQQFP SSKRQLHPSL SSMKPPLVAP GEYHRFDAAE TRGGGAVADQ VVSDAIVIKS TLKRKTDLVN QIVEVNELNT GVLQTPVSGK GGKAKKTSRS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DEYWNQMITF DQDHAGPSDN KILEQPQTPS SPTPEESTAT RSPTGS
101: AKSNKSGTLA SGSNAGSPGN NFAQAGTCRY DSSLGLLTKK FINLIKQAED GILDLNKAAD TLEVQKRRIY DITNVLEGIG LIEKTLKNRI QWKGLDVSKP
201: GETIESIANL QDEVQNLAAE EARLDDQIRE SQERLTSLSE DENNKRLLFV TENDIKNLPC FQNKTLIAVK APHGTTLEVP DPDEAGGYQR RYRIILRSTM
301: GPIDVYLVSQ FEESFEDIPQ ADEPSNVPDE PSNVPDVPSN LPSTSGLPEN HDVSMPMKEE STERNMETQE VDDTQRVYSD IESHDFVDGI MKIVPPDLDM
401: GVDYWFRSEV GEVSITDMWP DEYWNQMITF DQDHAGPSDN KILEQPQTPS SPTPEESTAT RSPTGS
Arabidopsis Description
E2FBTranscription factor E2FB [Source:UniProtKB/Swiss-Prot;Acc:Q9FV71]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.