Factsheet for Zm00001d050664_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016737_P002	Maize	mitochondrion, plastid	82.89	67.6
GSMUA_Achr5P17430_001	Banana	plastid	33.16	59.43
Os02t0537500-01	Rice	mitochondrion	72.89	58.32
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	68.42	56.77
TraesCS6D01G182600.1	Wheat	mitochondrion, plastid	68.42	56.77
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	68.16	56.55
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	67.11	55.68
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.16	44.74
Zm00001d003755_P001	Maize	nucleus	42.37	43.87
VIT_08s0007g02510.t01	Wine grape	plastid	53.42	43.56
VIT_06s0080g01110.t01	Wine grape	nucleus	50.53	43.05
GSMUA_Achr6P07100_001	Banana	mitochondrion	53.68	43.04
Zm00001d023465_P002	Maize	cytosol	49.47	41.32
KRH25298	Soybean	nucleus	48.68	41.11
KRH30372	Soybean	nucleus	49.74	41.09
PGSC0003DMT400015188	Potato	nucleus	47.37	40.63
KRH72218	Soybean	nucleus	49.47	40.17
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	47.37	40.09
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	47.63	39.96
PGSC0003DMT400042347	Potato	plastid	49.74	39.54
KRH32815	Soybean	nucleus	48.42	39.48
Solyc01g007760.2.1	Tomato	plastid	49.47	39.25
Bra023047.1-P	Field mustard	plastid	48.42	39.23
CDX84581	Canola	plastid	47.89	39.22
CDX92373	Canola	nucleus	45.0	38.6
CDX98588	Canola	nucleus	44.74	38.37
Bra002398.1-P	Field mustard	nucleus	44.74	38.37
CDY43755	Canola	plastid	48.42	37.63
Bra017268.1-P	Field mustard	plastid	48.16	37.58
CDX84164	Canola	plastid	47.37	37.34
AT5G22220.2	Thale cress	cytosol	45.53	36.89
Bra005305.1-P	Field mustard	plastid	46.58	36.8
CDX70990	Canola	nucleus	43.95	36.38
Bra006615.1-P	Field mustard	nucleus	43.95	36.07
CDX88807	Canola	cytosol	44.21	34.78
CDX79651	Canola	plastid	46.58	34.1
CDX75078	Canola	plastid	46.84	33.33
AT2G36010.2	Thale cress	plastid	43.16	31.91
KRH26172	Soybean	nucleus	14.74	29.79
PGSC0003DMT400013986	Potato	cytosol	7.37	28.57
Zm00001d004512_P001	Maize	plastid	34.21	27.78
Solyc06g074010.2.1	Tomato	nucleus	48.16	21.61

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A1D6Q2U2	ProteinID:AQK52898.1	ncoils:Coil
InterPro:E2F	InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF72	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	UniParc:UPI000842F0D0	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d050664	EnsemblPlants:Zm00001d050664_P002
EnsemblPlants:Zm00001d050664_T002	SEG:seg	:	:	:	:

Description

E2F-DP-transcription factor 216Transcription factor E2FB

Coordinates

chr4:-:112999831..113003992

Molecular Weight (calculated)

41386.2 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.360

Length

380 amino acids

Sequence
(BLAST)

001: MSGVGSGRPP AAQKILQSLR PPLSFSTPSR PPFAAPDDYH RFPTPAAATS PAATSGGVGA GAAPPDTVEE GLVIRTPLKR KATSEENAAA DSSSCIITSP
101: MLTPVSAKTV KASKAKAKNS KTGPQTPTSN VGSPLNPPTP VGTCRYDNSL GLLTKKFINL LKQAPDGILD LNNAAEVLEV QKRRIYDITN VLEGIGLIEK
201: TLKNRIRWKA LDDSSVQLDN GISALQVFVF AEVENLSLQE QALDERISDI REKLRGLTED ENNQRWLYVT EDDIKGLPSF QNETLIAIKA PHGTTLEVPD
301: PDEAGDYLQR RYRIVLRSTM GPIDVYLVSC YSLMFLTLKI KEAQWDEMDF LSEDVVTPRA HNQQLVTVDG PHMEVPSTDP

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.