Factsheet for TraesCS6D01G182600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G233700.2	Wheat	mitochondrion, plastid	99.13	99.13
HORVU0Hr1G038470.7	Barley	mitochondrion, plastid	96.07	96.07
TraesCS6A01G195500.2	Wheat	mitochondrion, plastid	96.07	96.07
Os02t0537500-01	Rice	mitochondrion	74.89	72.21
Zm00001d016737_P002	Maize	mitochondrion, plastid	70.52	69.31
Zm00001d050664_P002	Maize	mitochondrion, plastid	56.77	68.42
OQU85083	Sorghum	mitochondrion, plastid	65.07	63.27
GSMUA_Achr5P17430_001	Banana	plastid	27.29	58.96
TraesCS2D01G295300.2	Wheat	mitochondrion	55.9	55.9
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.56	55.5
GSMUA_Achr6P07100_001	Banana	mitochondrion	55.24	53.38
VIT_06s0080g01110.t01	Wine grape	nucleus	50.44	51.79
TraesCS5D01G133600.1	Wheat	cytosol	49.56	51.13
VIT_08s0007g02510.t01	Wine grape	plastid	51.97	51.07
KRH25298	Soybean	nucleus	48.91	49.78
KRH30372	Soybean	nucleus	49.13	48.91
PGSC0003DMT400042347	Potato	plastid	50.66	48.54
Solyc01g007760.2.1	Tomato	plastid	50.66	48.43
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	46.07	46.99
PGSC0003DMT400015188	Potato	nucleus	45.2	46.73
KRH72218	Soybean	nucleus	47.38	46.37
KRH32815	Soybean	nucleus	46.51	45.71
Bra023047.1-P	Field mustard	plastid	46.72	45.63
CDX92373	Canola	nucleus	43.89	45.37
CDX98588	Canola	nucleus	43.89	45.37
CDX84581	Canola	plastid	45.85	45.26
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	44.76	45.25
Bra002398.1-P	Field mustard	nucleus	43.67	45.15
Bra005305.1-P	Field mustard	plastid	47.38	45.11
Bra017268.1-P	Field mustard	plastid	47.82	44.97
CDX84164	Canola	plastid	47.16	44.81
CDY43755	Canola	plastid	47.82	44.79
AT5G22220.2	Thale cress	cytosol	44.98	43.92
CDX70990	Canola	nucleus	43.89	43.79
Bra006615.1-P	Field mustard	nucleus	43.67	43.2
CDX88807	Canola	cytosol	43.89	41.61
CDX75078	Canola	plastid	47.38	40.64
CDX79651	Canola	plastid	44.98	39.69
AT2G36010.2	Thale cress	plastid	44.54	39.69
PGSC0003DMT400013986	Potato	cytosol	6.99	32.65
KRH26172	Soybean	nucleus	13.32	32.45
TraesCS2D01G031400.1	Wheat	plastid	31.22	31.15
Solyc06g074010.2.1	Tomato	nucleus	46.07	24.91

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	ncoils:Coil	InterPro:E2F	InterPro:E2F-DP_heterodim
InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005667	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF48	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	EnsemblPlantsGene:TraesCS6D01G182600	EnsemblPlants:TraesCS6D01G182600.1	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	TIGR:cd14660
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:214540815..214559511

Molecular Weight (calculated)

49911.4 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.624

Length

458 amino acids

Sequence
(BLAST)

001: MSGGGRPPAA QKILQSLRPP PVFSTPSRPP FASPDDYHRF HAPTTPSATG SGGIGAGGVG GDIDEGLVIR TQLKRKATRE ENNAAESSDC MIVTTGVTGN
101: PLLTPVSGKA VKNSKSKTKN NKAGPQTPTP NVGSPLNPST PAGTCRYDSS LGLLTKKFIN LLKQAEDGIL DLNNAAETLE VQKRRIYDIT NVLEGIGLIE
201: KTLKNRIRWK GLDDSGVELD NGLSGLQTEV ENLNLQEQAL DERISDMREK LRGLTEDENS QRWLYVTEDD IKGLPCFQNE TLIAIKAPHG TTLEVPDPDE
301: AGDYLQRRYR IVLRSTLGPI DVYLVSQFDD GFENLGGAAT PPRHTNVPKP GPCEDLHATN ATQSSKSINV EYTIQHRQNT PQDPSSSNDY GGMTRIIPSD
401: VNTDADYWLL TEGDVSITDM WETAPEVQWD TAVFLPEDVS TPHAHHSPRM QVPSMDQP

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.