Factsheet for Zm00001d003755_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU81541	Sorghum	nucleus	69.75	56.02
Os04t0416100-01	Rice	nucleus	43.05	49.53
GSMUA_Achr5P17430_001	Banana	plastid	26.98	46.7
Zm00001d050664_P002	Maize	mitochondrion, plastid	43.87	42.37
TraesCS2B01G313600.2	Wheat	nucleus	51.23	41.14
TraesCS2A01G297400.1	Wheat	nucleus	50.95	40.83
TraesCS2D01G295300.2	Wheat	mitochondrion	50.41	40.39
GSMUA_Achr6P18220_001	Banana	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	43.05	38.63
Zm00001d016737_P002	Maize	mitochondrion, plastid	46.87	36.91
VIT_08s0007g02510.t01	Wine grape	plastid	46.05	36.27
KRH25298	Soybean	nucleus	44.41	36.22
VIT_06s0080g01110.t01	Wine grape	nucleus	43.87	36.1
KRH30372	Soybean	nucleus	45.23	36.09
GSMUA_Achr6P07100_001	Banana	mitochondrion	46.59	36.08
PGSC0003DMT400015188	Potato	nucleus	43.32	35.89
KRH72218	Soybean	nucleus	44.69	35.04
Solyc11g068800.1.1	Tomato	mitochondrion, nucleus	42.78	34.97
PGSC0003DMT400050512	Potato	mitochondrion, nucleus	43.05	34.88
KRH32815	Soybean	nucleus	43.6	34.33
Bra023047.1-P	Field mustard	plastid	43.05	33.69
Zm00001d023465_P002	Maize	cytosol	41.69	33.63
CDX84581	Canola	plastid	42.23	33.41
Solyc01g007760.2.1	Tomato	plastid	43.32	33.19
PGSC0003DMT400042347	Potato	plastid	43.05	33.05
CDX98588	Canola	nucleus	39.24	32.51
CDX92373	Canola	nucleus	38.96	32.28
HORVU2Hr1G073750.2	Barley	plastid	48.5	32.19
Bra002398.1-P	Field mustard	nucleus	38.69	32.05
Bra017268.1-P	Field mustard	plastid	41.69	31.42
Bra005305.1-P	Field mustard	plastid	41.14	31.39
CDX84164	Canola	plastid	41.14	31.33
CDY43755	Canola	plastid	41.69	31.29
CDX70990	Canola	nucleus	38.96	31.15
AT5G22220.2	Thale cress	cytosol	39.24	30.7
Bra006615.1-P	Field mustard	nucleus	38.69	30.67
CDX79651	Canola	plastid	42.51	30.06
PGSC0003DMT400013986	Potato	cytosol	7.9	29.59
CDX88807	Canola	cytosol	38.69	29.4
CDX75078	Canola	plastid	41.14	28.28
KRH26172	Soybean	nucleus	14.44	28.19
AT2G36010.2	Thale cress	plastid	37.06	26.46
Zm00001d004512_P001	Maize	plastid	30.79	24.15
Solyc06g074010.2.1	Tomato	nucleus	43.05	18.65

Protein Annotations

Gene3D:1.10.10.10	MapMan:13.1.2.2	MapMan:15.5.10	UniProt:A0A1D6EBF1	ncoils:Coil	InterPro:E2F
InterPro:E2F-DP_heterodim	InterPro:E2F_CC-MB	InterPro:E2F_WHTH_DNA-bd_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005667	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	InterPro:IPR036388	ProteinID:ONM17669.1
PFAM:PF02319	PFAM:PF16421	PANTHER:PTHR12081	PANTHER:PTHR12081:SF45	SMART:SM01372	SUPFAM:SSF144074
SUPFAM:SSF46785	UniParc:UPI00084504D0	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	EnsemblPlantsGene:Zm00001d003755	EnsemblPlants:Zm00001d003755_P001
EnsemblPlants:Zm00001d003755_T001	SEG:seg	:	:	:	:

Description

E2F-DP-transcription factor 217Transcription factor E2FB

Coordinates

chr2:+:57722583..57731864

Molecular Weight (calculated)

40732.1 Da

IEP (calculated)

9.093

GRAVY (calculated)

-0.485

Length

367 amino acids

Sequence
(BLAST)

001: MSESARPAVA RKIVKSLQRC TRHSLERPPF ETALGEYCQF PRPSLSPAAA AAATSGGRGE VDEGIFVRTP PKCSRLPNYL SGRIIMWIRA LACSGSPGNP
101: PTPAGCRYDN SLALLTKKFI NLLNEAQDGI LDLNSTAEML GVRKRRMYDI TNVLEGIGLI KKKLKNRICW KGLGELGTNL DNDLSVLKID FENLNLQEQA
201: LDEHISKIRE KLKDLTEDEG NQRWLFLTED DIKGLPCFQN KTLIAIKAPH GSSLEVPNPD VMTGDSLQRR YRIVVRSTMG PIDLYLVSKT EEEMEGKLDD
301: AAAPAGHTNV AKHGSIKCPR TKRAWQRSRK EEVVPKAQKI QKTPDLNAPC HSEGVLRKIN PSDVEVS

Best Arabidopsis Sequence Match ( AT2G36010.1 )
(BLAST)

001: MSGVVRSSPG SSQPPPPPPH HPPSSPVPVT STPVIPPIRR HLAFASTKPP FHPSDDYHRF NPSSLSNNND RSFVHGCGVV DREEDAVVVR SPSRKRKATM
101: DMVVAPSNNG FTSSGFTNIP SSPCQTPRKG GRVNIKSKAK GNKSTPQTPI STNAGSPITL TPSGSCRYDS SLGLLTKKFV NLIKQAKDGM LDLNKAAETL
201: EVQKRRIYDI TNVLEGIDLI EKPFKNRILW KGVDACPGDE DADVSVLQAE IENLALEEQA LDNQIRQTEE RLRDLSENEK NQKWLFVTEE DIKSLPGFQN
301: QTLIAVKAPH GTTLEVPDPD EAADHPQRRY RIILRSTMGP IDVYLVSEFE GKFEDTNGSG AAPPACLPIA SSSGSTGHHD IEALTVDNPE TAIVSHDHPH
401: PQPGDTSDLN YLQEQVGGML KITPSDVEND ESDYWLLSNA EISMTDIWKT DSGIDWDYGI ADVSTPPPGM GEIAPTAVDS TPR

Arabidopsis Description

E2F3E2F transcription factor 3 [Source:UniProtKB/TrEMBL;Acc:F4ILT1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.