Factsheet for GSMUA_Achr8P00470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	nucleus
GSMUA_Achr1P09780_001	nucleus, nucleus
GSMUA_Achr1P14060_001
GSMUA_Achr2P05260_001	nucleus, nucleus
GSMUA_Achr2P06030_001	nucleus
GSMUA_Achr3P01010_001	nucleus, nucleus
GSMUA_Achr3P06030_001	nucleus
GSMUA_Achr3P13140_001	nucleus, nucleus
GSMUA_Achr4P07110_001	nucleus
GSMUA_Achr4P17950_001	nucleus
GSMUA_Achr4P20220_001	nucleus, nucleus
GSMUA_Achr5P26370_001
GSMUA_Achr6P07740_001	nucleus
GSMUA_Achr6P16910_001	nucleus
GSMUA_Achr7P19980_001	nucleus
GSMUA_Achr8P26900_001
GSMUA_Achr8P28400_001	nucleus
GSMUA_Achr9P28180_001	nucleus
GSMUA_AchrUn_...	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	GSMUA_Achr4P17950_001	AT1G47870.1	20407024
AT3G12280.1	GSMUA_Achr4P17950_001	AT1G47870.1	20706207
AT3G12280.1	GSMUA_Achr3P06030_001	AT1G70210.1	20407024
AT3G12280.1	GSMUA_Achr7P19980_001	AT1G70210.1	20407024
AT3G12280.1	GSMUA_Achr9P28180_001	AT1G70210.1	20407024
AT3G12280.1	GSMUA_Achr5P26370_001	AT3G20740.1	15221456
AT3G12280.1	GSMUA_Achr5P26370_001	AT3G20740.1	18812497
AT3G12280.1	GSMUA_Achr2P06030_001	AT3G24140.1	24571519
AT3G12280.1	GSMUA_Achr8P28400_001	AT3G24140.1	24571519
AT3G12280.1	GSMUA_Achr1P09780_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr2P05260_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr3P01010_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr3P13140_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr4P20220_001	AT3G50070.1	20407024
AT3G12280.1	GSMUA_AchrUn_...	AT3G50070.1	20407024
AT3G12280.1	GSMUA_Achr1P14060_001	AT3G55760.1	20706207
AT3G12280.1	GSMUA_Achr8P26900_001	AT3G55760.1	20706207
AT3G12280.1	GSMUA_Achr1P09780_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr2P05260_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr3P01010_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr3P13140_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr4P20220_001	AT4G34160.1	20407024
AT3G12280.1	GSMUA_AchrUn_...	AT4G34160.1	20407024
AT3G12280.1	GSMUA_Achr10P...	AT4G37630.1	20407024
AT3G12280.1	GSMUA_Achr4P07110_001	AT4G37630.1	20407024
AT3G12280.1	GSMUA_Achr6P07740_001	AT4G37630.1	20407024
AT3G12280.1	GSMUA_Achr6P16910_001	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0538700-01	Rice	nucleus	70.55	70.2
EES14166	Sorghum	nucleus	69.15	68.68
Zm00001d052695_P016	Maize	nucleus	68.16	68.02
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	69.15	67.94
VIT_04s0008g02780.t01	Wine grape	nucleus	66.97	66.9
TraesCS7B01G162700.4	Wheat	nucleus, plastid	66.87	65.82
TraesCS7A01G264800.1	Wheat	nucleus	66.77	65.72
TraesCS7D01G265600.3	Wheat	nucleus	66.67	65.11
KRH13310	Soybean	nucleus	64.48	64.48
KRH20664	Soybean	nucleus	64.58	64.0
PGSC0003DMT400030280	Potato	nucleus	64.58	63.88
Solyc09g091280.2.1	Tomato	cytosol	64.28	63.46
HORVU7Hr1G055440.9	Barley	plastid	67.16	63.44
KRH63701	Soybean	nucleus	63.88	63.31
AT3G12280.1	Thale cress	nucleus	61.89	61.4
CDY52614	Canola	cytosol	60.9	60.71
CDY08440	Canola	nucleus	61.19	60.53
Bra034764.1-P	Field mustard	nucleus	61.09	60.43
CDY42141	Canola	cytosol	60.99	60.28
CDY50559	Canola	nucleus	60.8	60.2
Bra038707.1-P	Field mustard	nucleus	60.8	59.96
CDX73827	Canola	nucleus	58.91	58.56
GSMUA_Achr6P08220_001	Banana	nucleus	58.31	58.54
Bra001446.1-P	Field mustard	nucleus	59.2	57.94
VIT_14s0068g00840.t01	Wine grape	cytosol	31.94	54.59
CDY00765	Canola	mitochondrion	59.4	53.49
CDY52391	Canola	nucleus	10.25	44.59

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.2.1	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSMUA_Achr8G00470_001	EnsemblPlants:GSMUA_Achr8P00470_001
EnsemblPlants:GSMUA_Achr8T00470_001	UniProt:M0TLE9	PFAM:PF01857	PFAM:PF01858	PFAM:PF11934	PANTHER:PTHR13742
PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B	InterPro:RB_C	InterPro:RB_N
InterPro:RB_fam	SMART:SM01367	SMART:SM01368	SMART:SM01369	SUPFAM:SSF47954	UniParc:UPI000294D3D0
SEG:seg	:	:	:	:	:

Description

Retinoblastoma-related protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G00470_001]

Coordinates

chr8:+:373078..382095

Molecular Weight (calculated)

111543.0 Da

IEP (calculated)

8.304

GRAVY (calculated)

-0.159

Length

1005 amino acids

Sequence
(BLAST)

0001: MEDMKPSIAS LADDDGTMEA RFADLCKSKL SLDESTLRQA MVLFRESRHV LVANMSAIGS GLPEEIERLW SAFILYCVTK LSKARSKQEK EENSVSLCQI
0101: LRAFKLNVVE FFKEMPQFCL KAGYILSGLY GSEWEKKLEL KELQANIVHL SLLSRYYKRA YEELFLQNDA KSSQDSAVSC AKDYVSDCHR FGWLLFLALR
0201: IHAFSRFKDL VTCTNGLVSI LAVLILHVPV RFRKFVVQDS PIFAKKSGKG VNLLASLCDK YDASEDELRR VMEMVNSLIV NILKKNPCSL LDGKKENLAH
0301: IDTDGLTYFE DLMEEKSLQS SIVILEKDYD DAILKGELDE RMFVNDDDSL LGSGSLSGGA VNICGTKRKY DAITSPAKSI TSPMSPPCSP GSPLKGGLIG
0401: IFKIAPATPV STAMTTAKWL RSIISPLPSR PSSELLRFLS SCDRDVTSDV IQRASIILGA IFPCTSFGER CVSVSMQNAA RMDSIWAEQR KSEALKLYYR
0501: VLEAMCRAES QILNGINLTS LLSNERFHRC MLACSAELVL TTHKTVTLMF PAVLERTGIT AFDLSKVIES FVRHEETLPR ELKRHLNSLE ERLLESMAWE
0601: KGSSMYNTLI VARPTLSAEI NRLGLLAEPM PSLDAIAGSY NVSAAGLPLP FQKQEHSPDQ NGDTISPKKA CNDYRNVLVE RNFLASPVKD RAFNSPKSKL
0701: PPLQSAFASP TRPSPTGGGE TCAETGTNIF FNKIVKLAAI RIKSLSEWLQ LSQQILERVY CLIQQILTHR TALFFNRHID QLILCSFYGV AKISQLSLTF
0801: KEIIYNYRKQ PQCKPQVFRS VFVHWPSTSR NGKTGEEHVD IITFYNEVFI PSVKPLLVEL GPGGVNNRSN RSPEDKISSD CQIPGSPRIP PFPNLPDMSP
0901: KKVSAVHNVY VSPLRSTKMD TLLSPSSKSY YACVGESTHA YQSPSKDLSA INNRLNGGRK VSGRLNFDVV SDFVVAGTLQ DGNSASSSTA APTTTSVAKA
1001: EQPEP

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.