Factsheet for Bra001446.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001929.1-P	nucleus
Bra007901.1-P	nucleus
Bra011501.1-P	nucleus
Bra012909.1-P	nucleus
Bra014096.1-P	nucleus
Bra017629.1-P	nucleus
Bra017840.1-P	nucleus
Bra023783.1-P
Bra023933.1-P
Bra028351.1-P	nucleus
Bra028357.1-P	nucleus
Bra029992.1-P	nucleus
Bra034612.1-P	nucleus
Bra040062.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G12280.1	Bra014096.1-P	AT1G47870.1	20407024
AT3G12280.1	Bra014096.1-P	AT1G47870.1	20706207
AT3G12280.1	Bra007901.1-P	AT1G70210.1	20407024
AT3G12280.1	Bra040062.1-P	AT3G08880.1	21798944
AT3G12280.1	Bra023933.1-P	AT3G20740.1	15221456
AT3G12280.1	Bra023933.1-P	AT3G20740.1	18812497
AT3G12280.1	Bra001929.1-P	AT3G24140.1	24571519
AT3G12280.1	Bra028351.1-P	AT3G24140.1	24571519
AT3G12280.1	Bra028357.1-P	AT3G24140.1	24571519
AT3G12280.1	Bra012909.1-P	AT3G50070.1	20407024
AT3G12280.1	Bra029992.1-P	AT3G50070.1	20407024
AT3G12280.1	Bra023783.1-P	AT3G55760.1	20706207
AT3G12280.1	Bra011501.1-P	AT4G34160.1	20407024
AT3G12280.1	Bra017629.1-P	AT4G34160.1	20407024
AT3G12280.1	Bra034612.1-P	AT4G34160.1	20407024
AT3G12280.1	Bra017840.1-P	AT4G37630.1	20407024

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73827	Canola	nucleus	96.3	97.82
Bra034764.1-P	Field mustard	nucleus	84.23	85.14
AT3G12280.1	Thale cress	nucleus	82.57	83.71
Bra038707.1-P	Field mustard	nucleus	82.67	83.32
KRH13310	Soybean	nucleus	66.21	67.66
KRH20664	Soybean	nucleus	66.11	66.96
VIT_04s0008g02780.t01	Wine grape	nucleus	65.24	66.6
KRH63701	Soybean	nucleus	65.34	66.17
PGSC0003DMT400030280	Potato	nucleus	63.49	64.17
Solyc09g091280.2.1	Tomato	cytosol	63.1	63.65
GSMUA_Achr8P00470_001	Banana	nucleus	57.94	59.2
Os08t0538700-01	Rice	nucleus	56.86	57.82
EES14166	Sorghum	nucleus	56.48	57.31
Zm00001d052695_P016	Maize	nucleus	55.6	56.7
Zm00001d031678_P003	Maize	cytosol, nucleus, plastid	55.79	56.01
TraesCS7A01G264800.1	Wheat	nucleus	53.55	53.87
TraesCS7B01G162700.4	Wheat	nucleus, plastid	53.36	53.67
TraesCS7D01G265600.3	Wheat	nucleus	53.55	53.45
GSMUA_Achr6P08220_001	Banana	nucleus	51.8	53.15
HORVU7Hr1G055440.9	Barley	plastid	53.26	51.41
Os11t0533500-01	Rice	nucleus	46.35	48.67
TraesCS4A01G143200.1	Wheat	plastid	46.15	48.32
Zm00001d007407_P006	Maize	cytosol, nucleus, plastid	40.6	47.77
TraesCS4D01G159600.1	Wheat	cytosol, nucleus, plastid	45.57	47.71
HORVU4Hr1G039890.2	Barley	cytosol, nucleus, plastid	45.47	47.65
TraesCS4B01G162200.1	Wheat	nucleus	45.47	47.6
OQU83580	Sorghum	plastid	40.12	47.47
KXG21076	Sorghum	plastid	40.31	47.26
Zm00001d052666_P014	Maize	nucleus	40.21	44.79
KXG26019	Sorghum	cytosol	10.71	40.89

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.10.472.140	MapMan:13.1.2.1	EnsemblPlantsGene:Bra001446	EnsemblPlants:Bra001446.1	EnsemblPlants:Bra001446.1-P
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006357	GO:GO:0007049	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0051726	UniProt:M4CB66	PFAM:PF01857	PFAM:PF01858
PFAM:PF11934	PANTHER:PTHR13742	PANTHER:PTHR13742:SF22	InterPro:RBR	InterPro:RB_A	InterPro:RB_B
InterPro:RB_N	InterPro:RB_fam	SMART:SM00385	SMART:SM01367	SMART:SM01368	SUPFAM:SSF47954
UniParc:UPI000254079D	SEG:seg	:	:	:	:

Description

AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding

Coordinates

chrA03:-:16407364..16412290

Molecular Weight (calculated)

114343.0 Da

IEP (calculated)

8.238

GRAVY (calculated)

-0.179

Length

1027 amino acids

Sequence
(BLAST)

0001: MEEVQPPVTP PIDSNGDRSE ATLLDLCEKV LFLEGRVCDE ALKLFTETKQ ILSASMSNIG SGTAEEMERL WFASILYSVK MLSVRREVDG KSVVAGGNGF
0101: NLCQILRALK LNIVDFFREL PQFIVKAGPV LCEIYGADWE SRLQAKELQA NVAHLSLLSS YYKRGYREFF LTYDANAEKT SASSSSYLPS SYRFGWLLFL
0201: ALRNHAFSRF KDLVTCTNGL VSILAILIIH VPCRFRNFNI QGTSRFVKKD DKDVDLIASL CKIYDASEDE LRATMDKTNN LIETILKKKP SACQTDKLDN
0301: IDTDGLTYFE DLLDETSIST SLITLEKDYT DAVCNRSELD ERVFINEEDS LLGSGSLSAG AVNITGVKRK IDCLSSPART VICALSPHKS PAAKTNSIGG
0401: ANRLTATPVS TAMTTAKWLR TVICTLPPKP SPVLERFLKS CDRDITSDVT RRAHVILEAI FPNSFLGDRC TGGSLQPVNL MDDIWAKERR LEAIKLYYRV
0501: LETLCRAEAQ ILHATNLNSL LTNERFHRCM LACSAELVLA THKSITMLFP AVLERTGITA FDLCKVIESF IRHEDSLPRE LRRHLNSLEE RLLESMVWEK
0601: GSSMYNSLII AKPSLAQEIN QLRLLAEPMP SLDAIAALIN FSEGLNHASS VQKHETCPGQ NGDIKSPKRQ CTDYHSVLVE RNSFTSPVKD RLLASGNVKS
0701: KLPPPPLQSA FARYIVGVNL PFFYLKSANP TRPSPAGGGE TCAETGINIF FTKINKLAAV RINGMVERLQ LSQQIRESVY RLFQHVLTQQ TSLLFNRHID
0801: QIILCCFYGV AKLSQMRLTF KEIVFNYRKQ PQCKPLVFGS VYVDSFHCRR QGRVGPDYVN IITFYNDVFV PAAKTLLVEI VPVKNDQDVE ANNKPEGHCP
0901: GSSKVSVFPS VPDMSPKKVS AVHNVYVSPL RASKIDALIS HSSRSSYACV GESTRAYQSP SKDLSAINNR LNNSSNRNRK RTLNFDIELV SDSMVANSLP
1001: LQNQQNQNGS DASPSGGAPL KTEPLHS

Best Arabidopsis Sequence Match ( AT3G12280.2 )
(BLAST)

0001: MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN
0101: LCQILRALKL NIVDFFKELP QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS ANSSTYLLDS YRFGWLLFLA
0201: LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
0301: DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA
0401: TKLAATPVST AMTTAKWLRT VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM DDIWAEQRRL EACKLYYRVL
0501: EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
0601: SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK
0701: MLPPPLQSAF ASPTRPNPGG GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR HIDQIILCCF YGVAKISQMS
0801: LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
0901: KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSNR KRTLNFDAEA GMVSDSMVAN SLNLQNQNQN QNGSDASSSG
1001: GAAPLKTEPT DS

Arabidopsis Description

RBR1RBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.