Factsheet for Bra017629.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001736.1-P
Bra002947.1-P
Bra006781.1-P
Bra009606.1-P
Bra015735.1-P
Bra018036.1-P
Bra022391.1-P
Bra028880.1-P
Bra029917.1-P
Bra034380.1-P
Bra039199.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34160.1	Bra015735.1-P	AT1G76540.1	12857813
AT4G34160.1	Bra039199.1-P	AT2G23430.1	12569402
AT4G34160.1	Bra039199.1-P	AT2G23430.1	16766674
AT4G34160.1	Bra034380.1-P	AT2G27970.1	17426018
AT4G34160.1	Bra034380.1-P	AT2G27970.1	20706207
AT4G34160.1	Bra001736.1-P	AT3G19150.1	17426018
AT4G34160.1	Bra022391.1-P	AT3G19150.1	17426018
AT4G34160.1	Bra001736.1-P	AT3G19150.1	20706207
AT4G34160.1	Bra022391.1-P	AT3G19150.1	20706207
AT4G34160.1	Bra018036.1-P	AT3G48750.1	11096103
AT4G34160.1	Bra029917.1-P	AT3G48750.1	11096103
AT4G34160.1	Bra018036.1-P	AT3G48750.1	16517759
AT4G34160.1	Bra029917.1-P	AT3G48750.1	16517759
AT4G34160.1	Bra018036.1-P	AT3G48750.1	16766674
AT4G34160.1	Bra029917.1-P	AT3G48750.1	16766674
AT4G34160.1	Bra018036.1-P	AT3G48750.1	17426018
AT4G34160.1	Bra029917.1-P	AT3G48750.1	17426018
AT4G34160.1	Bra018036.1-P	AT3G48750.1	20706207
AT4G34160.1	Bra029917.1-P	AT3G48750.1	20706207
AT4G34160.1	Bra009606.1-P	AT5G02220.1	17426018
AT4G34160.1	Bra028880.1-P	AT5G02220.1	17426018
AT4G34160.1	Bra009606.1-P	AT5G02220.1	20706207
AT4G34160.1	Bra028880.1-P	AT5G02220.1	20706207
AT4G34160.1	Bra002947.1-P	AT5G54900.1	20706207
AT4G34160.1	Bra006781.1-P	AT5G58150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49278	Canola	nucleus	98.1	97.83
Bra034612.1-P	Field mustard	nucleus	84.51	84.51
Bra011501.1-P	Field mustard	nucleus	85.33	84.18
AT4G34160.1	Thale cress	nucleus	84.24	82.45
VIT_07s0129g01100.t01	Wine grape	nucleus	46.2	55.02
PGSC0003DMT400066557	Potato	nucleus	51.09	52.51
Solyc01g107730.2.1	Tomato	nucleus	51.36	51.92
VIT_03s0180g00040.t01	Wine grape	nucleus	54.08	51.55
KRG90996	Soybean	nucleus	54.89	51.4
KRH35760	Soybean	nucleus	54.62	50.0
Bra012146.1-P	Field mustard	nucleus	43.75	45.48
Bra012909.1-P	Field mustard	nucleus	40.49	45.43
Bra029992.1-P	Field mustard	nucleus	42.66	44.6
Bra036051.1-P	Field mustard	nucleus	42.39	44.19
GSMUA_Achr2P05260_001	Banana	nucleus	31.79	33.91
GSMUA_Achr1P09780_001	Banana	cytosol	35.6	33.76
GSMUA_Achr3P13140_001	Banana	nucleus	36.14	32.68
GSMUA_Achr4P20220_001	Banana	nucleus	32.07	32.6
Bra038518.1-P	Field mustard	nucleus	25.0	31.72
HORVU5Hr1G050270.8	Barley	cytosol	29.89	31.34
Bra007901.1-P	Field mustard	nucleus	28.8	31.27
GSMUA_AchrUn_...	Banana	cytosol	26.63	30.91
TraesCS5A01G161000.1	Wheat	cytosol	29.62	30.79
TraesCS5B01G158400.1	Wheat	cytosol	29.62	30.79
TraesCS5D01G165900.1	Wheat	cytosol	29.62	30.79
GSMUA_Achr3P01010_001	Banana	nucleus	32.88	29.73
Os09t0111100-01	Rice	cytosol	28.53	28.85
Bra037817.1-P	Field mustard	nucleus	21.74	28.37
Bra024383.1-P	Field mustard	nucleus	23.37	27.92
Bra030232.1-P	Field mustard	nucleus	26.63	27.61
Bra031858.1-P	Field mustard	nucleus	22.28	27.42
EER96424	Sorghum	cytosol	27.99	26.96
Zm00001d019696_P001	Maize	cytosol	28.26	26.87
Zm00001d005293_P001	Maize	cytosol	27.99	26.34
Bra017840.1-P	Field mustard	nucleus	23.37	25.22
Bra009031.1-P	Field mustard	nucleus	19.84	24.58
Bra034198.1-P	Field mustard	nucleus	18.48	22.82
Bra009612.1-P	Field mustard	cytosol	19.02	20.59
Bra005708.1-P	Field mustard	cytosol	19.02	20.41

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EnsemblPlantsGene:Bra017629	EnsemblPlants:Bra017629.1	EnsemblPlants:Bra017629.1-P	InterPro:Cyclin-like
InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	UniProt:M4DM97	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF351	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00025411F5	SEG:seg

Description

AT4G34160 (E=6e-134) CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1); cyclin-dependent protein kinase regulator/ protein binding

Coordinates

chrA03:+:29410559..29411891

Molecular Weight (calculated)

42251.2 Da

IEP (calculated)

4.642

GRAVY (calculated)

-0.327

Length

368 amino acids

Sequence
(BLAST)

001: MAIRKEDESR EEQSTSFLLD ALYCEEEKWE DEEETEEVEE NSSFSSSSPT SPLVLLQQDL YWEDEDLVTL FSKEEEQRLS RLDEVYLATD RKEAVGWILR
101: VNARYGFSTL TAVLAITYLD KFICSYSLQR DKPWMLQLVS VACLSLAAKV EEVHIPLLLD FQVEETKYVF EAKTIQRMEL LLLSTLQWKM HLVTPLSFLD
201: HIIRRLGLKN NSHWDFLNRC HRLILSVISD SRFVGYLPSV VAAATMMRII DQVETFDPLS HQTNLLGVLN ITKEKVEACY NLILQLPLDH MGLQIETQSC
301: RKRKSRDSSS SLSSPSCVID SNPFNSDESS NDSWSASSCN PPSSSPQQQQ QEPPLKKTKM EKPILHLS

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.