Factsheet for Bra002947.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17286	Canola	nucleus	99.75	97.53
AT5G54900.1	Thale cress	nucleus	74.49	76.23
Bra019078.1-P	Field mustard	nucleus	74.75	71.84
Bra010418.1-P	Field mustard	nucleus	64.39	67.46
Bra026387.1-P	Field mustard	nucleus	64.39	64.89
Solyc07g064510.2.1	Tomato	plastid	60.86	58.78
PGSC0003DMT400057203	Potato	cytosol	59.6	58.56
VIT_19s0090g00280.t01	Wine grape	nucleus	62.37	53.35
Bra031774.1-P	Field mustard	nucleus	51.77	52.03
Bra027446.1-P	Field mustard	cytosol	41.16	50.94
Bra018813.1-P	Field mustard	mitochondrion, nucleus	44.95	45.64
Bra001735.1-P	Field mustard	nucleus	45.71	43.93
Bra022389.1-P	Field mustard	nucleus	44.95	41.78
Bra002230.1-P	Field mustard	nucleus	44.19	41.77
Bra040663.1-P	Field mustard	nucleus	38.89	41.4
Zm00001d021149_P001	Maize	cytosol	17.17	41.21
Bra006502.1-P	Field mustard	nucleus	43.69	40.23
Bra037538.1-P	Field mustard	nucleus	39.65	38.96
Bra014216.1-P	Field mustard	nucleus	40.15	27.8
Bra030985.1-P	Field mustard	mitochondrion, nucleus	27.53	26.08
Bra030908.1-P	Field mustard	nucleus	26.77	25.3
Bra037962.1-P	Field mustard	nucleus	26.26	24.7
Bra034301.1-P	Field mustard	mitochondrion	6.57	23.42
Bra011488.1-P	Field mustard	cytosol, plastid	25.0	16.15
Bra034603.1-P	Field mustard	cytosol, plastid	25.0	15.99
Bra037217.1-P	Field mustard	nucleus	15.15	15.75
Bra013104.1-P	Field mustard	cytosol	24.49	15.75
Bra032172.1-P	Field mustard	cytosol	25.51	15.68
Bra039603.1-P	Field mustard	nucleus	14.39	15.66
Bra016371.1-P	Field mustard	plastid	23.48	15.63
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	23.74	15.02
Bra018797.1-P	Field mustard	cytosol	24.49	14.85
Bra015220.1-P	Field mustard	cytosol	21.46	14.71
Bra007984.1-P	Field mustard	plastid	22.47	14.26
Bra016118.1-P	Field mustard	plastid	23.48	13.6
Bra003915.1-P	Field mustard	cytosol	21.97	13.43
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	17.68	13.41
Bra022413.1-P	Field mustard	cytosol	11.36	10.09
Bra039841.1-P	Field mustard	cytosol	4.29	7.98

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra002947	EnsemblPlants:Bra002947.1	EnsemblPlants:Bra002947.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4CFG5
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002544290	SEG:seg	:

Description

AT5G54900 (E=4e-124) ATRBP45A | ATRBP45A (RNA-binding protein 45A); RNA binding

Coordinates

chrA10:+:6566174..6568455

Molecular Weight (calculated)

43365.4 Da

IEP (calculated)

6.255

GRAVY (calculated)

-0.783

Length

396 amino acids

Sequence
(BLAST)

001: MQQPPQNAAG AGQQIPSDQQ AYHQQKLSWM MQQQQGQQWN QQSAPSQGQQ PYGSQNPGSD NEIRSLWIGA LQPWMDESYI MTVFAQAGEV QSAKVIRNKL
101: TGMCEGYGFV EFANHAAAER VLQTYNGTQM PNSDQTFRLN WAQAGAGERR QAEGPEYTIF VGDLAPEVTD FMLAETFSNV YASVKGAKVM MDRSTGRTKG
201: YGFVRFGDES EQMRAMGEMN GQYCSSRPMR LGPAANKKPL AMQPGMYQDT QGGGNPGESD PSNTTIFVGA LDASVTDEEL RAVFGQFGEL THVKIPPGKR
301: CGFVQYATRA SAEHALLNLN GTQLGGQSIR LSWGRSPNNQ AQPHQAQWNG GGGYYGYPPQ PQGFEPYGHG APRPQDPSAY YGGGYGGYGN YQQQRQ

Best Arabidopsis Sequence Match ( AT5G54900.1 )
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Arabidopsis Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.