Factsheet for Bra034301.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33264	Canola	mitochondrion, nucleus	98.2	54.5
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	84.68	18.01
AT3G16380.1	Thale cress	nucleus	70.27	14.53
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	51.35	11.97
GSMUA_Achr4P00840_001	Banana	cytosol	44.14	10.12
KRH32613	Soybean	cytosol	43.24	9.82
KRH19986	Soybean	cytosol	42.34	9.49
Solyc09g008620.1.1	Tomato	cytosol	48.65	8.93
PGSC0003DMT400033802	Potato	cytosol	47.75	8.72
Bra022413.1-P	Field mustard	cytosol	32.43	8.07
Bra016371.1-P	Field mustard	plastid	42.34	7.9
Bra013104.1-P	Field mustard	cytosol	42.34	7.63
KRH67800	Soybean	cytosol	43.24	7.59
Bra034603.1-P	Field mustard	cytosol, plastid	42.34	7.59
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	42.34	7.51
Bra011488.1-P	Field mustard	cytosol, plastid	41.44	7.5
Bra027446.1-P	Field mustard	cytosol	21.62	7.5
Bra032172.1-P	Field mustard	cytosol	43.24	7.45
Solyc10g085750.1.1	Tomato	nucleus	41.44	7.4
KRG96088	Soybean	cytosol	42.34	7.39
Bra018797.1-P	Field mustard	cytosol	43.24	7.35
Bra015220.1-P	Field mustard	cytosol	37.84	7.27
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	42.34	7.26
Bra007984.1-P	Field mustard	plastid	40.54	7.21
PGSC0003DMT400021673	Potato	cytosol	40.54	7.17
TraesCS4D01G205700.1	Wheat	cytosol	40.54	6.89
Bra016118.1-P	Field mustard	plastid	42.34	6.87
Bra039603.1-P	Field mustard	nucleus	22.52	6.87
Bra037217.1-P	Field mustard	nucleus	23.42	6.82
KXG40160	Sorghum	nucleus	44.14	6.8
TraesCS4B01G204800.1	Wheat	cytosol	39.64	6.76
TraesCS4A01G099500.1	Wheat	cytosol	39.64	6.75
HORVU4Hr1G059070.1	Barley	cytosol	39.64	6.73
Zm00001d047790_P001	Maize	plastid	44.14	6.67
Bra003915.1-P	Field mustard	cytosol	38.74	6.64
Bra002947.1-P	Field mustard	nucleus	23.42	6.57
Bra026387.1-P	Field mustard	nucleus	22.52	6.36
Bra022389.1-P	Field mustard	nucleus	24.32	6.34
Bra040663.1-P	Field mustard	nucleus	20.72	6.18
Bra018813.1-P	Field mustard	mitochondrion, nucleus	21.62	6.15
Bra019078.1-P	Field mustard	nucleus	22.52	6.07
Bra001735.1-P	Field mustard	nucleus	22.52	6.07
Bra037538.1-P	Field mustard	nucleus	21.62	5.96
Bra010418.1-P	Field mustard	nucleus	19.82	5.82
Bra002230.1-P	Field mustard	nucleus	21.62	5.73
Bra006502.1-P	Field mustard	nucleus	21.62	5.58
Bra031774.1-P	Field mustard	nucleus	18.92	5.33
Bra030908.1-P	Field mustard	nucleus	19.82	5.25
Bra037962.1-P	Field mustard	nucleus	19.82	5.23
Bra030985.1-P	Field mustard	mitochondrion, nucleus	18.92	5.02
Bra014216.1-P	Field mustard	nucleus	20.72	4.02
Bra039841.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Bra034301.1	EnsemblPlants:Bra034301.1-P	EnsemblPlantsGene:Bra034301	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR24012	PANTHER:PTHR24012:SF674	PFAM:PF00076	PFscan:PS50102	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00025452B6	UniProt:M4EZQ8	MapMan:35.1	:	:

Description

AT3G16380 (E=5e-036) PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA binding / translation initiation factor

Coordinates

chrA04:-:11758485..11759184

Molecular Weight (calculated)

12379.8 Da

IEP (calculated)

10.348

GRAVY (calculated)

-0.369

Length

111 amino acids

Sequence
(BLAST)

001: MRIMWSQKDV AYRRRSGLGN LFVKNLDSSI TSSCLERMFS PFGVILSCKV AEENGQSKGF GFVQFATEQS AVAARLASHG SMVDGKKLNQ RNKAARDIWK
101: LWEDSLSKSD A

Best Arabidopsis Sequence Match ( AT3G16380.1 )
(BLAST)

001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ

Arabidopsis Description

PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.