CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047790_P001	Maize	plastid	89.46	87.76
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	67.41	75.12
TraesCS4D01G205700.1	Wheat	cytosol	63.52	70.14
TraesCS4B01G204800.1	Wheat	cytosol	63.11	69.89
TraesCS4A01G099500.1	Wheat	cytosol	62.83	69.48
HORVU4Hr1G059070.1	Barley	cytosol	62.69	69.11
Solyc10g085750.1.1	Tomato	nucleus	40.64	47.11
VIT_08s0007g04380.t01	Wine grape	cytosol	41.19	46.85
KRH32613	Soybean	cytosol	31.76	46.83
PGSC0003DMT400021673	Potato	cytosol	40.36	46.34
CDY72408	Canola	plastid	5.96	46.24
KRH19986	Soybean	cytosol	31.62	46.06
KRH67800	Soybean	cytosol	39.81	45.41
KRG96088	Soybean	cytosol	39.81	45.13
Bra034301.1-P	Field mustard	mitochondrion	6.8	44.14
GSMUA_Achr9P10860_001	Banana	cytosol	43.55	43.92
PGSC0003DMT400033802	Potato	cytosol	36.48	43.26
Solyc09g008620.1.1	Tomato	cytosol	35.92	42.81
AT2G36660.1	Thale cress	cytosol, plastid	34.67	41.05
KXG35258	Sorghum	cytosol	35.51	39.02
CDY33264	Canola	mitochondrion, nucleus	10.82	39.0
CDY57754	Canola	nucleus	11.23	38.03
EER89984	Sorghum	plastid	32.87	37.56
EES12460	Sorghum	plastid	33.84	36.75
CDY30168	Canola	cytosol	24.27	32.53
CDY56198	Canola	cytosol	21.64	31.9
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	22.05	30.46
EER94133	Sorghum	nucleus	12.48	25.35
EER95718	Sorghum	nucleus	11.1	22.1
OQU91463	Sorghum	nucleus	12.21	21.52
EER95414	Sorghum	nucleus	12.34	21.45
EES10898	Sorghum	nucleus	12.21	20.8
KXG35789	Sorghum	nucleus	12.48	20.55
EES15356	Sorghum	nucleus	12.21	19.69
EES08860	Sorghum	nucleus	11.79	19.27
EES05289	Sorghum	plastid	11.37	18.85
KXG27152	Sorghum	nucleus	10.96	18.2
KXG24662	Sorghum	nucleus	11.37	17.98
KXG36337	Sorghum	nucleus	11.37	17.19
KXG27463	Sorghum	nucleus	12.62	8.46

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A1B6QQF6	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	EnsemblPlants:KXG40160	ProteinID:KXG40160
ProteinID:KXG40160.2	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	EnsemblPlantsGene:SORBI_3001G417700
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000B8BA465	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:69872797..69877562

Molecular Weight (calculated)

80347.5 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.553

Length

721 amino acids

Sequence
(BLAST)

001: MGPARREGEE REPAVRRSGH RDRDERAASQ ARTVSRIRRA LRRLKGGGGP PVASLGPRPR RNRRMEAPAS AHASAAAAAA ADSQEESASA PAAANEEAQP
101: AAAAVPALYV GDLHEDVAEE HLFDAFSKIG TVTSVRVCRD NATSRSLRYG YVNYFSRADA VMALDKLNHS LVLDKPIRVM WSNRDPDARR SGVGNIFVKN
201: LNNSVDNASL QELFSKFGDV LSCKVAKNED GTSRGYGFVQ FASQESADEA IGNLNGSLFN DRKLHVATFI KKSERSANND DKFTNLYMKH LDDDITEELV
301: KLKFSQFGPI VSVKIMRRPD GSSLGFGFVS FQNPESAIKA QETMHGMLLG SKALYVARAQ KKEERKQYLQ RLHEEKRNEI ITKSNESNVY IKNIHDEVDD
401: DALRARFAEY GNITSAKVMR DDKGISRGFG FVCYSTPEEA KSVVNSMRGV MFFGKPLYVA IFQRKEERRA KLQQHFAQLA RMVGPTNSMI PTGYPQVYFA
501: HPNAHIPQGP PRHGFVYPPM GLSHEWRPNM FPSAPNLPQI HSPMMPNSPR HYRSNRGRMG GNMMPLPHAV HAMNYVTHAQ PTKEFMSMPR QLLQRFNHSK
601: YFSNDVMANG LAIHQSDPVS TMNDSFSSYL ASAPPAEQKN LLGNRLYPLV ERHQPELASK ITGMLLELDN SEVVTLLCSS EMLSVKVDEC VQLLQATKPK
701: TEDHEALHPG FMMESPSVNA S

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.