Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72408 | Canola | plastid | 16.91 | 97.85 |
| CDY56198 | Canola | cytosol | 86.8 | 95.5 |
| CDY33264 | Canola | mitochondrion, nucleus | 31.41 | 84.5 |
| CDY57754 | Canola | nucleus | 32.9 | 83.1 |
| AT3G16380.1 | Thale cress | nucleus | 69.52 | 69.65 |
| VIT_09s0002g03160.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 40.15 | 45.38 |
| CDY67365 | Canola | plastid | 23.98 | 44.18 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 30.48 | 33.88 |
| KRH32613 | Soybean | cytosol | 29.93 | 32.92 |
| KRH19986 | Soybean | cytosol | 29.37 | 31.92 |
| CDX89664 | Canola | cytosol | 35.87 | 31.43 |
| CDX69025 | Canola | nucleus, plastid | 35.69 | 31.42 |
| CDY62723 | Canola | cytosol | 35.32 | 30.79 |
| CDY51957 | Canola | cytosol, plastid | 35.32 | 30.69 |
| CDX75397 | Canola | nucleus, plastid | 35.13 | 30.68 |
| CDX71223 | Canola | cytosol | 35.69 | 30.09 |
| CDY36634 | Canola | nucleus | 35.32 | 29.28 |
| CDY51045 | Canola | cytosol | 35.5 | 29.25 |
| CDY67921 | Canola | nucleus | 34.94 | 29.15 |
| PGSC0003DMT400033802 | Potato | cytosol | 32.9 | 29.11 |
| CDY54068 | Canola | cytosol | 35.32 | 29.1 |
| Solyc09g008620.1.1 | Tomato | cytosol | 32.71 | 29.09 |
| CDY38939 | Canola | nucleus | 34.76 | 29.04 |
| CDY46079 | Canola | nucleus | 33.83 | 28.93 |
| CDY41472 | Canola | cytosol, plastid | 34.39 | 28.86 |
| CDX89562 | Canola | nucleus | 34.57 | 28.84 |
| CDY03685 | Canola | nucleus | 33.46 | 27.99 |
| KRH67800 | Soybean | cytosol | 32.53 | 27.69 |
| KRG96088 | Soybean | cytosol | 32.71 | 27.67 |
| CDY37935 | Canola | nucleus | 33.46 | 27.65 |
| Solyc10g085750.1.1 | Tomato | nucleus | 31.78 | 27.49 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 33.27 | 27.45 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 33.27 | 27.41 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.9 | 27.36 |
| CDX96344 | Canola | plastid | 34.57 | 27.19 |
| CDX72826 | Canola | plastid | 34.57 | 27.19 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.71 | 27.16 |
| PGSC0003DMT400021673 | Potato | cytosol | 31.6 | 27.07 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 32.9 | 27.06 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 32.53 | 26.88 |
| CDY36684 | Canola | plastid | 32.71 | 26.47 |
| KXG40160 | Sorghum | nucleus | 32.53 | 24.27 |
| CDX79296 | Canola | plastid | 8.18 | 24.04 |
| Zm00001d047790_P001 | Maize | plastid | 32.34 | 23.67 |
| CDY06734 | Canola | mitochondrion | 10.97 | 19.34 |
| CDX92325 | Canola | nucleus | 11.15 | 18.63 |
| CDY63384 | Canola | mitochondrion, nucleus | 14.31 | 18.42 |
| CDY43894 | Canola | nucleus | 12.45 | 18.41 |
| CDY29263 | Canola | nucleus | 14.31 | 18.38 |
| CDX89287 | Canola | nucleus | 14.13 | 18.36 |
| CDY59539 | Canola | nucleus | 12.45 | 18.31 |
| CDY14290 | Canola | nucleus | 13.94 | 17.99 |
| CDX95176 | Canola | nucleus | 13.94 | 17.9 |
| CDY66740 | Canola | nucleus | 12.64 | 17.85 |
| CDY67617 | Canola | nucleus | 12.64 | 17.85 |
| CDY46671 | Canola | nucleus | 14.13 | 17.72 |
| CDX99265 | Canola | nucleus | 13.94 | 17.69 |
| CDY52067 | Canola | nucleus | 13.75 | 17.66 |
| CDY61476 | Canola | nucleus | 13.75 | 17.66 |
| CDY02486 | Canola | nucleus | 13.75 | 17.62 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 13.94 | 17.61 |
| CDY34835 | Canola | nucleus | 12.83 | 17.56 |
| CDX92304 | Canola | nucleus | 13.75 | 17.45 |
| CDY33092 | Canola | nucleus | 13.75 | 17.41 |
| CDY67364 | Canola | nucleus | 9.48 | 17.41 |
| CDY51403 | Canola | nucleus | 13.57 | 17.38 |
| CDY66423 | Canola | nucleus | 13.75 | 17.37 |
| CDY17286 | Canola | nucleus | 13.01 | 17.28 |
| CDX82310 | Canola | nucleus | 13.2 | 17.23 |
| CDY13992 | Canola | nucleus | 13.38 | 17.18 |
| CDY22988 | Canola | nucleus | 13.38 | 17.14 |
| CDY19874 | Canola | nucleus | 13.2 | 16.95 |
| CDY18570 | Canola | nucleus | 13.57 | 16.82 |
| CDY16528 | Canola | nucleus | 13.2 | 16.75 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 13.38 | 16.74 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 13.38 | 16.74 |
| CDY32840 | Canola | nucleus | 13.01 | 16.63 |
| CDY68866 | Canola | nucleus | 12.83 | 16.63 |
| CDX95462 | Canola | nucleus | 13.38 | 16.59 |
| CDY28101 | Canola | nucleus | 13.2 | 16.55 |
| CDY50959 | Canola | nucleus | 13.2 | 16.51 |
| CDY29341 | Canola | nucleus | 12.83 | 16.47 |
| CDX92537 | Canola | nucleus | 12.83 | 16.47 |
| CDX81822 | Canola | mitochondrion, nucleus | 14.5 | 14.31 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 12.64 | 13.41 |
| CDX91689 | Canola | nucleus | 4.65 | 8.2 |
| CDY37229 | Canola | cytosol | 2.42 | 6.1 |
| CDY08990 | Canola | cytosol | 0.56 | 3.03 |
| CDX79295 | Canola | cytosol, plastid | 0.56 | 3.0 |
Protein Annotations
| MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078H008 | UniProt:A0A078H008 | EnsemblPlants:CDY30168 | ProteinID:CDY30168 |
| ProteinID:CDY30168.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00044750001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF674 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE5E00 |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g36940DBnaC05g36940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H008]
Coordinates
chrLK032249:-:462110..464470
Molecular Weight (calculated)
59571.8 Da
IEP (calculated)
10.227
GRAVY (calculated)
-0.329
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIVKTEMQ AVGNSQSSSL ASLYVGDLSP DVTEADLTAK FSLTVPVVSA HLCRDSVTGK SLRYAYVNFD SAITASNAMA CLNHTDLKGK TMRIMWSQKD
101: VAYRRRSGLG NLFVKNLDSS ITSSCLERMF SPFGVILSCK VAVENGQSKG FGFVQFATEQ SSVAARLASH GSMVDGKKLF VAKFINRDER AAMSGNQEFT
201: NVYVKNLLES VTEDFLHTMF SQCGTVSSVV VMRDGMGRSR GFGFVNFCHP ENAKKAVETL NGQPHGSKKL FVGRALRKAE RMEMLKQKHK DNFVAKFNVG
301: WFNLYLKNLT ESMGETKLRE IFGSYGKIVS AKVMRDENGK SKGFGFVAFS TLDESKHAKR ELHGFIVDGQ SLVVRVAERK EDRFKRMQKY HPVQSRHYMQ
401: AAPVPSPAQP VPPSMDSPYG YLQPFHIGAY YYPMATQLPQ MSGHQNMTTY VPAGQAHLKE KISVQLVYRR PGYTTFVKSG AKQKLVFKGQ GDKNLEAGTC
501: STKAKTSAEK RKELSSHLMA MLTPNRNAAQ NLATLEVA
101: VAYRRRSGLG NLFVKNLDSS ITSSCLERMF SPFGVILSCK VAVENGQSKG FGFVQFATEQ SSVAARLASH GSMVDGKKLF VAKFINRDER AAMSGNQEFT
201: NVYVKNLLES VTEDFLHTMF SQCGTVSSVV VMRDGMGRSR GFGFVNFCHP ENAKKAVETL NGQPHGSKKL FVGRALRKAE RMEMLKQKHK DNFVAKFNVG
301: WFNLYLKNLT ESMGETKLRE IFGSYGKIVS AKVMRDENGK SKGFGFVAFS TLDESKHAKR ELHGFIVDGQ SLVVRVAERK EDRFKRMQKY HPVQSRHYMQ
401: AAPVPSPAQP VPPSMDSPYG YLQPFHIGAY YYPMATQLPQ MSGHQNMTTY VPAGQAHLKE KISVQLVYRR PGYTTFVKSG AKQKLVFKGQ GDKNLEAGTC
501: STKAKTSAEK RKELSSHLMA MLTPNRNAAQ NLATLEVA
001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
Arabidopsis Description
PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.