Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027167.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 99.18 | 92.91 |
| CDY30168 | Canola | cytosol | 95.5 | 86.8 |
| CDY57754 | Canola | nucleus | 27.61 | 63.38 |
| AT3G16380.1 | Thale cress | nucleus | 69.33 | 63.13 |
| CDY33264 | Canola | mitochondrion, nucleus | 24.74 | 60.5 |
| CDY72408 | Canola | plastid | 10.43 | 54.84 |
| VIT_09s0002g03160.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 39.06 | 40.13 |
| CDY67365 | Canola | plastid | 22.09 | 36.99 |
| KRH32613 | Soybean | cytosol | 29.86 | 29.86 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 29.24 | 29.55 |
| KRH19986 | Soybean | cytosol | 29.24 | 28.89 |
| CDX89664 | Canola | cytosol | 35.38 | 28.18 |
| CDX69025 | Canola | nucleus, plastid | 34.97 | 27.99 |
| CDX75397 | Canola | nucleus, plastid | 34.56 | 27.44 |
| CDY62723 | Canola | cytosol | 34.15 | 27.07 |
| CDY51957 | Canola | cytosol, plastid | 34.15 | 26.98 |
| CDX71223 | Canola | cytosol | 35.17 | 26.96 |
| Solyc09g008620.1.1 | Tomato | cytosol | 32.92 | 26.61 |
| CDY51045 | Canola | cytosol | 35.38 | 26.49 |
| PGSC0003DMT400033802 | Potato | cytosol | 32.92 | 26.48 |
| CDY54068 | Canola | cytosol | 35.17 | 26.34 |
| CDY36634 | Canola | nucleus | 34.56 | 26.04 |
| CDY38939 | Canola | nucleus | 33.95 | 25.78 |
| CDX89562 | Canola | nucleus | 33.74 | 25.58 |
| CDY67921 | Canola | nucleus | 33.54 | 25.43 |
| CDY46079 | Canola | nucleus | 32.52 | 25.28 |
| Solyc10g085750.1.1 | Tomato | nucleus | 31.9 | 25.08 |
| CDY03685 | Canola | nucleus | 32.92 | 25.04 |
| KRH67800 | Soybean | cytosol | 32.31 | 25.0 |
| CDY41472 | Canola | cytosol, plastid | 32.72 | 24.96 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 33.13 | 24.85 |
| KRG96088 | Soybean | cytosol | 32.31 | 24.84 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 33.13 | 24.81 |
| CDY37935 | Canola | nucleus | 32.92 | 24.73 |
| PGSC0003DMT400021673 | Potato | cytosol | 31.7 | 24.68 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 32.92 | 24.62 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 32.72 | 24.58 |
| Os03t0278500-01 | Rice | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 32.52 | 24.57 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 32.11 | 24.23 |
| CDX79296 | Canola | plastid | 9.0 | 24.04 |
| CDX96344 | Canola | plastid | 33.33 | 23.83 |
| CDX72826 | Canola | plastid | 32.92 | 23.54 |
| CDY36684 | Canola | plastid | 31.9 | 23.46 |
| KXG40160 | Sorghum | nucleus | 31.9 | 21.64 |
| Zm00001d047790_P001 | Maize | plastid | 31.7 | 21.09 |
| CDY06734 | Canola | mitochondrion | 11.86 | 19.02 |
| CDY34835 | Canola | nucleus | 14.52 | 18.07 |
| CDY29263 | Canola | nucleus | 15.13 | 17.66 |
| CDX89287 | Canola | nucleus | 14.93 | 17.63 |
| CDY63384 | Canola | mitochondrion, nucleus | 14.93 | 17.46 |
| CDY67364 | Canola | nucleus | 10.43 | 17.41 |
| CDX92325 | Canola | nucleus | 11.45 | 17.39 |
| CDX99265 | Canola | nucleus | 14.93 | 17.22 |
| CDX95176 | Canola | nucleus | 14.72 | 17.18 |
| CDY14290 | Canola | nucleus | 14.52 | 17.03 |
| CDY46671 | Canola | nucleus | 14.93 | 17.02 |
| CDX92304 | Canola | nucleus | 14.72 | 16.98 |
| CDY52067 | Canola | nucleus | 14.52 | 16.95 |
| CDY61476 | Canola | nucleus | 14.52 | 16.95 |
| CDY02486 | Canola | nucleus | 14.52 | 16.9 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 14.72 | 16.9 |
| CDY17286 | Canola | nucleus | 13.91 | 16.79 |
| CDX82310 | Canola | nucleus | 14.11 | 16.75 |
| CDY13992 | Canola | nucleus | 14.31 | 16.71 |
| CDY33092 | Canola | nucleus | 14.52 | 16.71 |
| CDY22988 | Canola | nucleus | 14.31 | 16.67 |
| CDY66423 | Canola | nucleus | 14.52 | 16.67 |
| CDY51403 | Canola | nucleus | 14.31 | 16.67 |
| CDY19874 | Canola | nucleus | 14.11 | 16.47 |
| CDY18570 | Canola | nucleus | 14.52 | 16.36 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 14.31 | 16.28 |
| CDY16528 | Canola | nucleus | 14.11 | 16.27 |
| CDY43894 | Canola | nucleus | 12.07 | 16.21 |
| CDY32840 | Canola | nucleus | 13.91 | 16.15 |
| CDY68866 | Canola | nucleus | 13.7 | 16.14 |
| CDX95462 | Canola | nucleus | 14.31 | 16.13 |
| CDY59539 | Canola | nucleus | 12.07 | 16.12 |
| CDY28101 | Canola | nucleus | 14.11 | 16.08 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 14.11 | 16.05 |
| CDY50959 | Canola | nucleus | 14.11 | 16.05 |
| CDY29341 | Canola | nucleus | 13.7 | 15.99 |
| CDX92537 | Canola | nucleus | 13.5 | 15.75 |
| CDY67617 | Canola | nucleus | 12.27 | 15.75 |
| CDY66740 | Canola | nucleus | 12.27 | 15.75 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.31 | 13.81 |
| CDX81822 | Canola | mitochondrion, nucleus | 15.13 | 13.58 |
| CDX91689 | Canola | nucleus | 4.7 | 7.54 |
| CDY37229 | Canola | cytosol | 2.66 | 6.1 |
| CDY08990 | Canola | cytosol | 0.61 | 3.03 |
| CDX79295 | Canola | cytosol, plastid | 0.61 | 3.0 |
Protein Annotations
| MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078J024 | UniProt:A0A078J024 | EnsemblPlants:CDY56198 | ProteinID:CDY56198 |
| ProteinID:CDY56198.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00017966001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF674 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEA45D |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g36900DBnaA05g36900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J024]
Coordinates
chrLK033468:-:19013..21297
Molecular Weight (calculated)
54050.2 Da
IEP (calculated)
10.338
GRAVY (calculated)
-0.351
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIVKTEMQ AVGNIQSSSL ASLYVGDLSP DVTEADLTAK FSLTVPVVSA HLCRDSVTAK SLRYAYVNFD SAITASNAMA CLNHTDLKGK TMRIMWSQKD
101: VAYRRRSGLG NLFVKNLDSS ITSSCLERMF SPFGVILSCK VAEENGQSKG FGFVQFATEQ SAVAARLASH GSMVDGKKLV VVMRDGMGRS RGFGFVNFCH
201: PENAKKAVES LNGKPHGTKK LFVGRALRKA ERMEMLKQKH KDNFVAKFNV GWFNLYVKNL SDAINETRLR EIFGSYGKIV SAKVMRDENG KSKGFGFVAF
301: STLDESKHAK RELHGFIVDG QSLVVRVAER KEDRFKRMQQ YHPVQSRHYM QAAPVPSPAQ PVPPSMDSPY GYLQPFHIGA YYYPMATQVP QMSGHQNMTT
401: YVPAGQAHLK EKRSVQLVYK RPGYTTFVKS GAKQKLVFKG QGDKTLEAGT CSTKGKTSAE KRKEVSSHLM AMLTPNRNAA ENLATLEVA
101: VAYRRRSGLG NLFVKNLDSS ITSSCLERMF SPFGVILSCK VAEENGQSKG FGFVQFATEQ SAVAARLASH GSMVDGKKLV VVMRDGMGRS RGFGFVNFCH
201: PENAKKAVES LNGKPHGTKK LFVGRALRKA ERMEMLKQKH KDNFVAKFNV GWFNLYVKNL SDAINETRLR EIFGSYGKIV SAKVMRDENG KSKGFGFVAF
301: STLDESKHAK RELHGFIVDG QSLVVRVAER KEDRFKRMQQ YHPVQSRHYM QAAPVPSPAQ PVPPSMDSPY GYLQPFHIGA YYYPMATQVP QMSGHQNMTT
401: YVPAGQAHLK EKRSVQLVYK RPGYTTFVKS GAKQKLVFKG QGDKTLEAGT CSTKGKTSAE KRKEVSSHLM AMLTPNRNAA ENLATLEVA
001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ
Arabidopsis Description
PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.