Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 90.23 | 99.49 |
| CDY28101 | Canola | nucleus | 98.84 | 99.07 |
| CDY16528 | Canola | nucleus | 92.09 | 93.4 |
| CDY32840 | Canola | nucleus | 90.7 | 92.64 |
| CDY68866 | Canola | nucleus | 86.74 | 89.88 |
| CDY29341 | Canola | nucleus | 87.21 | 89.5 |
| AT1G49600.3 | Thale cress | nucleus | 83.72 | 80.0 |
| CDY22988 | Canola | nucleus | 75.12 | 76.9 |
| CDX95462 | Canola | nucleus | 77.21 | 76.5 |
| CDY18570 | Canola | nucleus | 76.98 | 76.27 |
| CDX82310 | Canola | nucleus | 72.79 | 75.97 |
| CDX92304 | Canola | nucleus | 74.65 | 75.71 |
| CDX99265 | Canola | nucleus | 74.65 | 75.71 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 63.02 | 65.46 |
| Solyc01g108500.2.1 | Tomato | nucleus | 61.86 | 64.41 |
| PGSC0003DMT400066648 | Potato | nucleus | 61.63 | 63.1 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 45.35 | 62.5 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 45.12 | 62.18 |
| KRH50251 | Soybean | nucleus | 61.4 | 61.25 |
| KRH71168 | Soybean | nucleus | 61.16 | 61.02 |
| Solyc10g050860.1.1 | Tomato | nucleus | 60.47 | 60.75 |
| GSMUA_Achr10P... | Banana | nucleus | 43.95 | 60.19 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 43.26 | 59.42 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 46.28 | 58.19 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 46.05 | 57.89 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 46.05 | 57.89 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 33.72 | 55.98 |
| CDY52067 | Canola | nucleus | 51.63 | 52.98 |
| CDX95176 | Canola | nucleus | 51.4 | 52.74 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 17.91 | 52.38 |
| CDY06734 | Canola | mitochondrion | 36.74 | 51.8 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 45.35 | 51.45 |
| Os04t0449900-01 | Rice | plastid | 45.81 | 50.9 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 47.67 | 50.87 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 49.3 | 50.0 |
| KXG35789 | Sorghum | nucleus | 50.7 | 49.77 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 50.0 | 49.65 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.77 | 49.42 |
| CDY34835 | Canola | nucleus | 44.42 | 48.6 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 46.51 | 47.96 |
| CDX89287 | Canola | nucleus | 45.81 | 47.58 |
| TraesCS2A01G317700.2 | Wheat | plastid | 46.74 | 47.41 |
| TraesCS2D01G315400.2 | Wheat | plastid | 46.74 | 47.41 |
| TraesCS2B01G335700.1 | Wheat | plastid | 46.28 | 47.38 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 45.58 | 47.0 |
| EES10898 | Sorghum | nucleus | 46.05 | 46.81 |
| CDY17286 | Canola | nucleus | 43.72 | 46.42 |
| CDY14290 | Canola | nucleus | 44.88 | 46.28 |
| CDY29263 | Canola | nucleus | 44.88 | 46.06 |
| CDY66423 | Canola | nucleus | 45.35 | 45.77 |
| EES05289 | Sorghum | plastid | 46.05 | 45.52 |
| CDY46671 | Canola | nucleus | 45.12 | 45.22 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 46.28 | 45.12 |
| Zm00001d050838_P001 | Maize | plastid | 45.12 | 45.12 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 44.42 | 44.84 |
| CDY19874 | Canola | nucleus | 43.49 | 44.63 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 43.95 | 44.26 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 46.05 | 43.42 |
| Zm00001d025551_P002 | Maize | plastid | 44.19 | 42.04 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.28 | 41.98 |
| CDY13992 | Canola | nucleus | 40.0 | 41.05 |
| CDX92537 | Canola | nucleus | 39.77 | 40.81 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 39.53 | 39.53 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 39.53 | 39.53 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 44.65 | 37.87 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.05 | 26.79 |
| CDY51403 | Canola | nucleus | 25.12 | 25.71 |
| CDY61476 | Canola | nucleus | 24.88 | 25.54 |
| CDY02486 | Canola | nucleus | 24.88 | 25.48 |
| CDY33092 | Canola | nucleus | 25.12 | 25.41 |
| CDY67365 | Canola | plastid | 15.58 | 22.95 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.05 | 20.55 |
| CDY72408 | Canola | plastid | 3.49 | 16.13 |
| CDY59539 | Canola | nucleus | 13.26 | 15.57 |
| CDY66740 | Canola | nucleus | 13.49 | 15.22 |
| CDY67617 | Canola | nucleus | 13.49 | 15.22 |
| CDX69025 | Canola | nucleus, plastid | 21.63 | 15.22 |
| CDY43894 | Canola | nucleus | 12.79 | 15.11 |
| CDX75397 | Canola | nucleus, plastid | 21.63 | 15.1 |
| CDY51957 | Canola | cytosol, plastid | 21.63 | 15.02 |
| CDY57754 | Canola | nucleus | 7.44 | 15.02 |
| CDX89664 | Canola | cytosol | 21.4 | 14.98 |
| CDY62723 | Canola | cytosol | 21.4 | 14.91 |
| CDY38939 | Canola | nucleus | 22.09 | 14.75 |
| CDX89562 | Canola | nucleus | 22.09 | 14.73 |
| CDX71223 | Canola | cytosol | 21.63 | 14.58 |
| CDX79296 | Canola | plastid | 6.05 | 14.21 |
| CDY56198 | Canola | cytosol | 16.05 | 14.11 |
| CDY54068 | Canola | cytosol | 20.93 | 13.78 |
| CDY51045 | Canola | cytosol | 20.7 | 13.63 |
| CDY36634 | Canola | nucleus | 20.47 | 13.56 |
| CDY46079 | Canola | nucleus | 19.53 | 13.35 |
| CDY03685 | Canola | nucleus | 19.77 | 13.22 |
| CDY30168 | Canola | cytosol | 16.51 | 13.2 |
| CDY41472 | Canola | cytosol, plastid | 19.53 | 13.1 |
| CDX72826 | Canola | plastid | 20.7 | 13.01 |
| CDX96344 | Canola | plastid | 20.7 | 13.01 |
| CDY37935 | Canola | nucleus | 19.53 | 12.9 |
| CDY67921 | Canola | nucleus | 19.3 | 12.87 |
| CDY36684 | Canola | plastid | 19.77 | 12.78 |
| CDY33264 | Canola | mitochondrion, nucleus | 5.81 | 12.5 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 18.6 | 12.35 |
| CDX92325 | Canola | nucleus | 6.05 | 8.07 |
| CDY67364 | Canola | nucleus | 5.12 | 7.51 |
| CDY37229 | Canola | cytosol | 2.09 | 4.23 |
| CDX91689 | Canola | nucleus | 2.79 | 3.93 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078INF0 | UniProt:A0A078INF0 | EnsemblPlants:CDY50959 | ProteinID:CDY50959 |
| ProteinID:CDY50959.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00097836001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EF2C10 |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g37550DBnaA06g37550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INF0]
Coordinates
chrLK032953:+:14052..18469
Molecular Weight (calculated)
46948.1 Da
IEP (calculated)
5.994
GRAVY (calculated)
-0.729
Length
430 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNNGPDS SSAATTPPLQ QSTPPPQQQQ QQQWQQQQQW MAMMQHPAAM AMMQQQQMMM YPHQYAPYGQ GHYQHPQFQY AAYQQQQQQN HQQRGGSGGD
101: DVKTLWVGDL LHWMDETYLH TCFSHTNEVS SVKVIRNKQT SQSEGYGFVE FLSRSAAEEV LQSYSGVTMP NAEQPFRLNW ASFSTGEKRA SENGGPDLSI
201: FVGDLAPDVT DATLLETFAG YQSVKGAKVV IDSNTGRSKG YGFVRFGDES ERSRALTEMN GAFCSSRQMR VGIATPKRAA AYGQQNGSQA LTLAGGHGGN
301: GSMSDGDSNN STIFVGGLDA DVTEEDLMQP FSQFGEVVSV KIPVGKGCGF VQFGNRQSAE EAIGNLNGTV IGKNTVRLSW GRSPNRQWRG DSGHQWNGGY
401: SRGQGYNNNG YANQESNMYA TEAAAVPGAS
101: DVKTLWVGDL LHWMDETYLH TCFSHTNEVS SVKVIRNKQT SQSEGYGFVE FLSRSAAEEV LQSYSGVTMP NAEQPFRLNW ASFSTGEKRA SENGGPDLSI
201: FVGDLAPDVT DATLLETFAG YQSVKGAKVV IDSNTGRSKG YGFVRFGDES ERSRALTEMN GAFCSSRQMR VGIATPKRAA AYGQQNGSQA LTLAGGHGGN
301: GSMSDGDSNN STIFVGGLDA DVTEEDLMQP FSQFGEVVSV KIPVGKGCGF VQFGNRQSAE EAIGNLNGTV IGKNTVRLSW GRSPNRQWRG DSGHQWNGGY
401: SRGQGYNNNG YANQESNMYA TEAAAVPGAS
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.