Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 4
- nucleus 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 67.49 | 86.62 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 65.76 | 84.66 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 57.32 | 74.04 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 54.84 | 70.83 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 25.31 | 69.39 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 40.69 | 63.32 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 57.82 | 61.48 |
| Os04t0449900-01 | Rice | plastid | 57.82 | 60.21 |
| PGSC0003DMT400020621 | Potato | nucleus | 58.56 | 59.6 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 61.54 | 59.33 |
| KRH61258 | Soybean | nucleus | 59.55 | 58.68 |
| KRH51956 | Soybean | nucleus | 58.81 | 57.66 |
| Bra027446.1-P | Field mustard | cytosol | 45.66 | 57.5 |
| KRH05723 | Soybean | nucleus | 58.56 | 57.14 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 58.06 | 56.12 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 58.06 | 56.12 |
| EES10898 | Sorghum | nucleus | 58.81 | 56.03 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 45.41 | 55.79 |
| TraesCS2B01G335700.1 | Wheat | plastid | 57.82 | 55.48 |
| TraesCS2A01G317700.2 | Wheat | plastid | 58.31 | 55.42 |
| TraesCS2D01G315400.2 | Wheat | plastid | 58.31 | 55.42 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 56.82 | 55.31 |
| KRH15315 | Soybean | nucleus | 58.31 | 55.29 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 44.66 | 54.38 |
| EES05289 | Sorghum | plastid | 58.56 | 54.25 |
| Solyc04g079310.2.1 | Tomato | nucleus | 60.05 | 53.66 |
| Zm00001d050838_P001 | Maize | plastid | 56.33 | 52.79 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 55.09 | 51.99 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 58.56 | 51.75 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 49.88 | 51.54 |
| CDY06734 | Canola | mitochondrion | 38.96 | 51.48 |
| Solyc01g108500.2.1 | Tomato | nucleus | 52.11 | 50.85 |
| KRH50251 | Soybean | nucleus | 54.34 | 50.81 |
| CDY52067 | Canola | nucleus | 52.61 | 50.6 |
| AT1G47490.1 | Thale cress | nucleus | 54.09 | 50.46 |
| AT1G47500.1 | Thale cress | nucleus | 54.34 | 50.46 |
| Zm00001d025551_P002 | Maize | plastid | 56.58 | 50.44 |
| CDX95176 | Canola | nucleus | 52.36 | 50.36 |
| KRH71168 | Soybean | nucleus | 53.6 | 50.12 |
| PGSC0003DMT400066648 | Potato | nucleus | 52.11 | 50.0 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 57.82 | 49.16 |
| Bra001735.1-P | Field mustard | nucleus | 49.88 | 48.79 |
| CDX82310 | Canola | nucleus | 49.88 | 48.79 |
| CDY22988 | Canola | nucleus | 50.62 | 48.57 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 48.14 | 48.5 |
| CDY16528 | Canola | nucleus | 50.87 | 48.35 |
| CDY32840 | Canola | nucleus | 50.37 | 48.22 |
| CDY29341 | Canola | nucleus | 50.12 | 48.21 |
| Solyc10g050860.1.1 | Tomato | nucleus | 51.12 | 48.13 |
| CDY28101 | Canola | nucleus | 51.12 | 48.02 |
| CDY50959 | Canola | nucleus | 50.87 | 47.67 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 47.89 | 47.42 |
| CDX99265 | Canola | nucleus | 49.88 | 47.41 |
| CDX92304 | Canola | nucleus | 49.88 | 47.41 |
| CDY68866 | Canola | nucleus | 48.64 | 47.23 |
| Bra022389.1-P | Field mustard | nucleus | 49.88 | 47.18 |
| AT3G19130.1 | Thale cress | nucleus | 50.87 | 47.13 |
| GSMUA_Achr10P... | Banana | nucleus | 50.62 | 47.0 |
| Bra040663.1-P | Field mustard | nucleus | 42.43 | 45.97 |
| CDY18570 | Canola | nucleus | 49.38 | 45.85 |
| CDX95462 | Canola | nucleus | 49.13 | 45.62 |
| AT1G49600.3 | Thale cress | nucleus | 50.12 | 44.89 |
| Bra037538.1-P | Field mustard | nucleus | 42.68 | 42.68 |
| Bra014216.1-P | Field mustard | nucleus | 43.67 | 30.77 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 25.56 | 24.35 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 24.07 | 23.89 |
| GSMUA_Achr10P... | Banana | mitochondrion | 24.81 | 23.53 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 24.81 | 23.04 |
| GSMUA_Achr11P... | Banana | nucleus | 24.57 | 22.3 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 24.57 | 19.96 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 22.58 | 18.8 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 15.88 | 17.49 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 25.31 | 15.67 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 23.57 | 14.77 |
| GSMUA_AchrUn_... | Banana | cytosol | 23.57 | 14.57 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 22.83 | 14.11 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 22.08 | 13.36 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 21.34 | 12.03 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 19.11 | 11.88 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 22.33 | 9.96 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P01720_001 | EnsemblPlants:GSMUA_Achr3T01720_001 | EnsemblPlantsGene:GSMUA_Achr3G01720_001 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000295C2E3 | UniProt:M0SAZ0 | MapMan:16.9.4 | : |
Description
Putative Uncharacterized RNA-binding protein C23E6.01c [Source:GMGC_GENE;Acc:GSMUA_Achr3G01720_001]
Coordinates
chr3:-:1153482..1159824
Molecular Weight (calculated)
44385.3 Da
IEP (calculated)
8.120
GRAVY (calculated)
-0.508
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPVAGVDPR RTPPPQPWAA VRYPAPAMVM QHPMMAPPPY GHPFVAYHQT PTPPPPPPPL KSIRLHQAVD AAAEDEKRTI WVGDLHYWMD ENYLHSCFGH
101: SGEVVSIKVI RNKQTGQSEG YGFVEFHSHA TAENILQSFG SHLMPNTNHP YRLNWASFSM GDKHSDLASD HSIFVGDLAS DVTDTILQET FVTKYSSVKG
201: AKVVVDAHTG RSKGYGFVRF GDENEKKLAI TEMNGVYCST RPMRVGLATP KRFSGGFGPN GASAAGSQTD MDSANTTVFV GGLDPDVNED DLKEAFSRYG
301: EVASVKIPVG KQCGFVLFVH RNNAEEAMQQ LNGTIIGKQT VRLSWGRNPA KKQSRAERGK RWNGAYYGGQ VYDGYSLPPH YPGMYVLPPY GAYAFYGSQQ
401: QVN
101: SGEVVSIKVI RNKQTGQSEG YGFVEFHSHA TAENILQSFG SHLMPNTNHP YRLNWASFSM GDKHSDLASD HSIFVGDLAS DVTDTILQET FVTKYSSVKG
201: AKVVVDAHTG RSKGYGFVRF GDENEKKLAI TEMNGVYCST RPMRVGLATP KRFSGGFGPN GASAAGSQTD MDSANTTVFV GGLDPDVNED DLKEAFSRYG
301: EVASVKIPVG KQCGFVLFVH RNNAEEAMQQ LNGTIIGKQT VRLSWGRNPA KKQSRAERGK RWNGAYYGGQ VYDGYSLPPH YPGMYVLPPY GAYAFYGSQQ
401: QVN
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.