Factsheet for GSMUA_Achr4P09890_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P11420_001
GSMUA_Achr3P19230_001
GSMUA_Achr6P18240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	GSMUA_Achr2P11420_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr3P19230_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr6P18240_001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	85.74	85.74
GSMUA_Achr9P00990_001	Banana	cytosol	79.91	80.03
VIT_18s0001g10170.t01	Wine grape	cytosol	75.15	76.56
KRH70673	Soybean	nucleus	74.69	75.15
VIT_07s0031g00210.t01	Wine grape	cytosol	75.0	74.77
KRH50336	Soybean	cytosol	74.54	74.65
KRH15385	Soybean	nucleus	73.62	73.62
KRH05656	Soybean	endoplasmic reticulum, nucleus	73.01	72.78
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	71.93	71.93
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	67.33	71.85
GSMUA_Achr4P20270_001	Banana	cytosol	70.71	71.7
Zm00001d025801_P005	Maize	cytosol, plastid	71.32	71.32
EES12460	Sorghum	plastid	71.93	70.63
Os04t0504800-01	Rice	plasma membrane	71.17	70.41
KRH52023	Soybean	cytosol, endoplasmic reticulum	67.18	69.52
KRH61326	Soybean	cytosol, endoplasmic reticulum	67.02	69.37
TraesCS2D01G358000.1	Wheat	cytosol	70.25	68.98
CDY67364	Canola	nucleus	30.98	68.94
TraesCS2A01G359000.1	Wheat	cytosol	70.09	68.72
TraesCS2B01G378400.1	Wheat	nucleus	70.09	68.72
CDX89664	Canola	cytosol	62.88	66.78
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	66.1	66.51
CDY62723	Canola	cytosol	62.88	66.45
CDY51957	Canola	cytosol, plastid	63.04	66.4
Bra034603.1-P	Field mustard	cytosol, plastid	62.88	66.24
CDY54068	Canola	cytosol	66.1	66.0
Bra013104.1-P	Field mustard	cytosol	62.27	65.91
Bra011488.1-P	Field mustard	cytosol, plastid	61.81	65.74
CDY51045	Canola	cytosol	65.8	65.7
Bra018797.1-P	Field mustard	cytosol	65.8	65.7
CDX71223	Canola	cytosol	64.26	65.67
AT4G34110.1	Thale cress	cytosol	63.34	65.66
CDX69025	Canola	nucleus, plastid	61.2	65.3
CDX75397	Canola	nucleus, plastid	61.66	65.26
AT1G49760.1	Thale cress	cytosol	66.1	64.23
CDX79296	Canola	plastid	17.79	63.39
CDY36634	Canola	nucleus	62.73	63.02
CDY67365	Canola	plastid	28.22	63.01
Bra015220.1-P	Field mustard	cytosol	55.67	62.8
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	74.39	61.63
GSMUA_Achr5P24940_001	Banana	plastid	53.53	52.4
GSMUA_Achr7P05430_001	Banana	nucleus	72.24	52.1
PGSC0003DMT400012508	Potato	nucleus	9.82	51.61
Bra022413.1-P	Field mustard	cytosol	30.21	44.17
CDX92325	Canola	nucleus	20.71	41.93
GSMUA_Achr4P00840_001	Banana	cytosol	28.53	38.43
CDX91689	Canola	nucleus	16.56	35.41
GSMUA_Achr9P10860_001	Banana	cytosol	38.65	35.24
GSMUA_Achr6P10190_001	Banana	nucleus	13.96	29.07
GSMUA_Achr10P...	Banana	nucleus	13.65	28.34
GSMUA_Achr9P15210_001	Banana	nucleus	13.34	27.88
GSMUA_Achr3P06840_001	Banana	nucleus	13.19	27.56
GSMUA_Achr5P20140_001	Banana	nucleus	15.18	27.05
GSMUA_Achr6P29410_001	Banana	nucleus	13.5	26.83
GSMUA_Achr9P24980_001	Banana	cytosol	13.34	26.28
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	15.18	24.32
GSMUA_Achr10P...	Banana	nucleus	15.49	23.27
GSMUA_Achr6P11660_001	Banana	mitochondrion	15.03	23.17
GSMUA_Achr8P31320_001	Banana	nucleus	14.11	23.0
GSMUA_Achr9P14120_001	Banana	nucleus	14.26	22.91
GSMUA_Achr3P01720_001	Banana	mitochondrion	14.11	22.83
GSMUA_Achr11P...	Banana	nucleus	15.03	22.07
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	14.57	21.89
GSMUA_Achr10P...	Banana	mitochondrion	14.11	21.65
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	14.72	19.35
Solyc06g062680.1.1	Tomato	cytosol	14.88	18.27
GSMUA_Achr6P09470_001	Banana	nucleus	3.99	17.69

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	EnsemblPlantsGene:GSMUA_Achr4G09890_001
EnsemblPlants:GSMUA_Achr4P09890_001	EnsemblPlants:GSMUA_Achr4T09890_001	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M0SMK6
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI0002969653	SEG:seg	:	:	:

Description

Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G09890_001]

Coordinates

chr4:+:7179489..7190746

Molecular Weight (calculated)

71232.7 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.356

Length

652 amino acids

Sequence
(BLAST)

001: MAQAPMQQQA LNGTVNNGGG GAGGNQFPTT SLYVGDLQAS VTDAQVYDLF SQIAPVVSVR VCRDVNTRRS LGYAYVNYSN PVDAATALEV LNFTPLNNKP
101: IRIMYSNRDP SIRRSGAANI FIKNLDKTIG NKDLHGIFSS FGNILSCKVA TDASGQSKGY GFVQFDQEEA ALNAINKLNG MLVNDKPVFV GPFLRKQERE
201: NSLDKTKFSN VFVKNLSEST TREDLEKIFG KYGKITSAVV MRKEDGKSKC FGFVNFENPD DAARAVQELN GQEFGGEEWY VGRALKKSER EQELKEFFDQ
301: RAKDTMDKYQ GLNLYLKNLD ASIGDDKLRE LFSGFGTITS CKVMREPNGI SKGSGFVAFL AAEEAARALA EMNGKMVYGK PLYVALAQRK EDRRARLQAQ
401: FSQMRPVPMA PTVGPRVPMY PPGAPGLGQQ IFYGQGPPAL IPPQPGFGFQ QQLIPGMRPA GAPMPNFLVP LVQQGQQVHR PGGRRAGAGP VQQTQQPMPL
501: IQQQMLPRGR VQRYSPGRNM PDVPMPGVVS GMLSPYEMGG LPMRDVPIPQ PIPIGALASA LANSTPEQQR MMLGESLYPL VEQLERDHAA KVTGMLLEMD
601: QTEVLHLLES PDALKAKVAE ALEVLRTVAQ QQQANVPADQ LAALSLNDGL VS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.