Factsheet for GSMUA_AchrUn_randomP12020_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P11420_001
GSMUA_Achr3P19230_001
GSMUA_Achr6P18240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	GSMUA_Achr2P11420_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr3P19230_001	AT2G43970.1	21798944
AT4G34110.1	GSMUA_Achr6P18240_001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09890_001	Banana	cytosol	85.74	85.74
GSMUA_Achr9P00990_001	Banana	cytosol	77.76	77.88
VIT_18s0001g10170.t01	Wine grape	cytosol	73.93	75.31
VIT_07s0031g00210.t01	Wine grape	cytosol	74.08	73.85
KRH70673	Soybean	nucleus	73.01	73.46
KRH50336	Soybean	cytosol	72.55	72.66
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	72.24	72.24
KRH15385	Soybean	nucleus	72.09	72.09
KRH05656	Soybean	endoplasmic reticulum, nucleus	71.78	71.56
Zm00001d025801_P005	Maize	cytosol, plastid	71.17	71.17
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	66.56	71.03
EES12460	Sorghum	plastid	71.93	70.63
GSMUA_Achr4P20270_001	Banana	cytosol	69.02	69.98
Os04t0504800-01	Rice	plasma membrane	70.71	69.95
KRH52023	Soybean	cytosol, endoplasmic reticulum	67.02	69.37
KRH61326	Soybean	cytosol, endoplasmic reticulum	66.87	69.21
CDY67364	Canola	nucleus	30.37	67.58
TraesCS2D01G358000.1	Wheat	cytosol	68.56	67.32
TraesCS2A01G359000.1	Wheat	cytosol	68.56	67.22
TraesCS2B01G378400.1	Wheat	nucleus	68.56	67.22
CDY51957	Canola	cytosol, plastid	62.88	66.24
CDY62723	Canola	cytosol	62.58	66.13
Bra034603.1-P	Field mustard	cytosol, plastid	62.73	66.07
Bra011488.1-P	Field mustard	cytosol, plastid	61.96	65.91
AT4G34110.1	Thale cress	cytosol	63.5	65.82
CDX75397	Canola	nucleus, plastid	61.5	65.1
CDX69025	Canola	nucleus, plastid	60.89	64.98
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	64.57	64.97
CDY54068	Canola	cytosol	65.03	64.93
CDX71223	Canola	cytosol	63.5	64.89
CDX89664	Canola	cytosol	61.04	64.82
Bra018797.1-P	Field mustard	cytosol	64.88	64.78
CDY51045	Canola	cytosol	64.88	64.78
Bra013104.1-P	Field mustard	cytosol	60.43	63.96
CDX79296	Canola	plastid	17.94	63.93
AT1G49760.1	Thale cress	cytosol	65.34	63.49
CDY36634	Canola	nucleus	62.27	62.56
Bra015220.1-P	Field mustard	cytosol	55.06	62.11
CDY67365	Canola	plastid	26.99	60.27
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	72.39	59.97
GSMUA_Achr5P24940_001	Banana	plastid	54.6	53.45
PGSC0003DMT400012508	Potato	nucleus	10.12	53.23
GSMUA_Achr7P05430_001	Banana	nucleus	71.01	51.22
Bra022413.1-P	Field mustard	cytosol	29.6	43.27
CDX92325	Canola	nucleus	20.55	41.61
GSMUA_Achr4P00840_001	Banana	cytosol	28.37	38.22
GSMUA_Achr9P10860_001	Banana	cytosol	39.72	36.22
CDX91689	Canola	nucleus	16.41	35.08
GSMUA_Achr6P10190_001	Banana	nucleus	13.96	29.07
GSMUA_Achr10P...	Banana	nucleus	13.96	28.98
GSMUA_Achr9P15210_001	Banana	nucleus	13.34	27.88
GSMUA_Achr5P20140_001	Banana	nucleus	15.49	27.6
GSMUA_Achr3P06840_001	Banana	nucleus	13.19	27.56
GSMUA_Achr9P24980_001	Banana	cytosol	13.8	27.19
GSMUA_Achr6P29410_001	Banana	nucleus	13.5	26.83
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	15.34	24.57
GSMUA_Achr6P11660_001	Banana	mitochondrion	15.34	23.64
GSMUA_Achr3P01720_001	Banana	mitochondrion	14.57	23.57
GSMUA_Achr10P...	Banana	nucleus	15.34	23.04
GSMUA_Achr8P31320_001	Banana	nucleus	14.11	23.0
GSMUA_Achr9P14120_001	Banana	nucleus	14.26	22.91
GSMUA_Achr11P...	Banana	nucleus	15.18	22.3
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	14.72	22.12
GSMUA_Achr10P...	Banana	mitochondrion	14.26	21.88
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	14.88	19.56
Solyc06g062680.1.1	Tomato	cytosol	14.11	17.33
GSMUA_Achr6P09470_001	Banana	nucleus	3.83	17.01

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	EnsemblPlantsGene:GSMUA_AchrUn_randomG12020_001
EnsemblPlants:GSMUA_AchrUn_randomP12020_001	EnsemblPlants:GSMUA_AchrUn_randomT12020_001	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M0U8G1
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI000294C6AF	SEG:seg	:	:	:

Description

Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12020_001]

Coordinates

chrchrUn_random:+:57400010..57412359

Molecular Weight (calculated)

71435.7 Da

IEP (calculated)

7.385

GRAVY (calculated)

-0.401

Length

652 amino acids

Sequence
(BLAST)

001: MAQAPMQHQA PNGTVDNNIA SAGGGHSSPT SLYVGDLHGS VTDAQVYDLF SQIGPLLSVR VCHDVNTHRS LGYAYVNFIN PADAATALDV LNFTPLNNKP
101: IRIMYSNRDP SIRRSGAANV FIKNLDKEID NKALHEIFSS FGSILSCKVA TDASGQSKGY GFVQFDQEEA AQNAINKLNG MLVNDKPVFV GPFVRKQERE
201: NSLDKTKFCN VFVKNLSEST TKEDLENIFG KYGKITSAVV MREEDGKSKC FGFINFENPD AAARAVQELN GHKFDDKEWY VGKALKKSER ELELKEKFDR
301: NAKETMDKYQ GLNLYLKNLD DSIGDDELRE LFSGFGMITS CKVMREPNGI SKGSGFVAFS APDEAARALT EMNGKMVCGK PLYVAPAQRK EDRRAKLQAQ
401: FSQVRPVAMV PTAGTRFPMY PPGAPGVGQH IFYGQAPPGL IPPQPGFGFQ QQLIPGMRPT GAPMPNFLVP LVQQGQQMHR PGGRRSGVGP RQQMQQSMPL
501: VQQQMFPRGR VQRYPPGRNM PDIPIPGVVG GMLSPYDMGG LPMRDAPMSQ PIPIGALASA LANATPEQQR MMLGENLYPL VEQLEHDHAA KVTGMLLEMD
601: QTEVLHLLES PDALKAKVAE AMEVLRNVAQ QHQANAPTDQ LAALSLNDGL VS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.