Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79295 | Canola | cytosol, plastid | 28.67 | 84.0 |
| CDY08990 | Canola | cytosol | 26.96 | 79.8 |
| CDY37229 | Canola | cytosol | 51.88 | 71.36 |
| CDX79296 | Canola | plastid | 44.37 | 71.04 |
| Bra013104.1-P | Field mustard | cytosol | 95.22 | 45.29 |
| CDX89664 | Canola | cytosol | 93.17 | 44.46 |
| CDX71223 | Canola | cytosol | 88.4 | 40.6 |
| CDY36634 | Canola | nucleus | 87.03 | 39.29 |
| CDX75397 | Canola | nucleus, plastid | 79.52 | 37.82 |
| CDY62723 | Canola | cytosol | 78.16 | 37.12 |
| CDY51957 | Canola | cytosol, plastid | 78.16 | 37.0 |
| CDX69025 | Canola | nucleus, plastid | 76.79 | 36.82 |
| CDY54068 | Canola | cytosol | 76.45 | 34.3 |
| CDY51045 | Canola | cytosol | 75.43 | 33.84 |
| KRH70673 | Soybean | nucleus | 74.74 | 33.8 |
| PGSC0003DMT400066245 | Potato | extracellular | 74.06 | 33.75 |
| Solyc01g107870.2.1 | Tomato | extracellular | 74.06 | 33.75 |
| KRH50336 | Soybean | cytosol | 74.74 | 33.64 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 68.94 | 31.03 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 68.94 | 30.98 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 68.6 | 30.88 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 68.26 | 30.72 |
| KXG35258 | Sorghum | cytosol | 68.26 | 30.49 |
| Zm00001d005276_P007 | Maize | cytosol | 67.92 | 30.43 |
| GSMUA_AchrUn_... | Banana | cytosol | 67.58 | 30.37 |
| Os09t0115400-01 | Rice | nucleus | 68.6 | 30.36 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 63.14 | 30.28 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 66.55 | 29.95 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 65.19 | 29.94 |
| Zm00001d019824_P004 | Maize | cytosol | 66.55 | 29.73 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 65.53 | 29.09 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 63.48 | 28.93 |
| CDX91689 | Canola | nucleus | 30.03 | 28.85 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 65.19 | 28.85 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 63.82 | 28.68 |
| HORVU5Hr1G050560.1 | Barley | plastid | 68.6 | 28.63 |
| Os04t0504800-01 | Rice | plasma membrane | 64.16 | 28.53 |
| EES12460 | Sorghum | plastid | 64.16 | 28.31 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 64.16 | 28.31 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 64.16 | 28.27 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 62.8 | 28.22 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 63.82 | 28.12 |
| CDX92325 | Canola | nucleus | 30.38 | 27.64 |
| CDX89562 | Canola | nucleus | 60.07 | 27.29 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 73.04 | 27.19 |
| CDY38939 | Canola | nucleus | 59.04 | 26.86 |
| CDY67921 | Canola | nucleus | 59.04 | 26.82 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 65.19 | 26.68 |
| CDY46079 | Canola | nucleus | 55.97 | 26.07 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 58.36 | 25.33 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 54.27 | 24.54 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 66.55 | 21.57 |
| CDY37935 | Canola | nucleus | 44.03 | 19.82 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 43.34 | 19.6 |
| CDY41472 | Canola | cytosol, plastid | 42.66 | 19.5 |
| CDX72826 | Canola | plastid | 45.05 | 19.3 |
| CDX96344 | Canola | plastid | 45.05 | 19.3 |
| CDY03685 | Canola | nucleus | 41.64 | 18.97 |
| CDY36684 | Canola | plastid | 43.0 | 18.95 |
| CDY56198 | Canola | cytosol | 17.41 | 10.43 |
| CDY30168 | Canola | cytosol | 17.41 | 9.48 |
| CDY06734 | Canola | mitochondrion | 9.56 | 9.18 |
| CDY13992 | Canola | nucleus | 11.95 | 8.35 |
| CDX92537 | Canola | nucleus | 11.6 | 8.11 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 11.26 | 7.67 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 11.26 | 7.67 |
| CDY34835 | Canola | nucleus | 10.24 | 7.63 |
| CDY59539 | Canola | nucleus | 9.22 | 7.38 |
| CDX95176 | Canola | nucleus | 10.24 | 7.16 |
| CDY43894 | Canola | nucleus | 8.87 | 7.14 |
| CDX89287 | Canola | nucleus | 9.9 | 7.0 |
| CDY52067 | Canola | nucleus | 9.9 | 6.92 |
| CDY66740 | Canola | nucleus | 8.87 | 6.82 |
| CDY67617 | Canola | nucleus | 8.87 | 6.82 |
| CDY46671 | Canola | nucleus | 9.9 | 6.76 |
| CDY14290 | Canola | nucleus | 9.56 | 6.71 |
| CDY63384 | Canola | mitochondrion, nucleus | 9.56 | 6.7 |
| CDY19874 | Canola | nucleus | 9.56 | 6.68 |
| CDY29263 | Canola | nucleus | 9.56 | 6.68 |
| CDY17286 | Canola | nucleus | 9.22 | 6.67 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 9.56 | 6.57 |
| CDY57754 | Canola | nucleus | 4.78 | 6.57 |
| CDY66423 | Canola | nucleus | 9.56 | 6.57 |
| CDY61476 | Canola | nucleus | 9.22 | 6.44 |
| CDY02486 | Canola | nucleus | 9.22 | 6.43 |
| CDY51403 | Canola | nucleus | 8.87 | 6.19 |
| CDY33092 | Canola | nucleus | 8.87 | 6.12 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 10.58 | 6.11 |
| CDX81822 | Canola | mitochondrion, nucleus | 10.24 | 5.5 |
| CDY32840 | Canola | nucleus | 7.51 | 5.23 |
| CDY16528 | Canola | nucleus | 7.51 | 5.19 |
| CDY28101 | Canola | nucleus | 7.51 | 5.13 |
| CDY50959 | Canola | nucleus | 7.51 | 5.12 |
| CDX95462 | Canola | nucleus | 7.17 | 4.84 |
| CDY18570 | Canola | nucleus | 7.17 | 4.84 |
| CDY29341 | Canola | nucleus | 6.83 | 4.77 |
| CDY22988 | Canola | nucleus | 6.83 | 4.76 |
| CDY68866 | Canola | nucleus | 6.48 | 4.58 |
| CDX92304 | Canola | nucleus | 6.14 | 4.25 |
| CDX99265 | Canola | nucleus | 6.14 | 4.25 |
| CDX82310 | Canola | nucleus | 5.46 | 3.88 |
| CDY67365 | Canola | plastid | 3.07 | 3.08 |
| CDY33264 | Canola | mitochondrion, nucleus | 1.02 | 1.5 |
| CDY72408 | Canola | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078JKR3 | UniProt:A0A078JKR3 | EnsemblPlants:CDY67364 |
| ProteinID:CDY67364 | ProteinID:CDY67364.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00062822001 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom |
| InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 |
| PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00517 | SUPFAM:SSF54928 |
| SUPFAM:SSF63570 | UniParc:UPI0004EEDA53 | SEG:seg | : | : | : |
Description
BnaA03g57630DBnaA03g57630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JKR3]
Coordinates
chrLK036027:-:2731..5147
Molecular Weight (calculated)
31729.6 Da
IEP (calculated)
9.902
GRAVY (calculated)
-0.477
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MFAPYGTVTS SKVMRDANGI SRGAGFVAFS TPEEATKAMS EMSGKMIENK PLYVAVAQRK EDRRARLQAQ FSQMRPMAMP PAVGPRMQMY PPGGPGMGQQ
101: MFYGQGPPTM ITQPPGFGYQ QQLVPGMRPG GAPMHNFFMP MVQQGQQRPG GRRPVGIQQS QQPQQHQMQP RGRMFRYPQG RGSGGGPPDV PGRLPYEMPQ
201: HVPIGALATS LANASPEHQR AMLGENLYPL VEQLEAESAA KVTGMLLEMD QTEVLHLLES PEALKAKVAE AMDVLRSVAG GGAAEQLASL NLN
101: MFYGQGPPTM ITQPPGFGYQ QQLVPGMRPG GAPMHNFFMP MVQQGQQRPG GRRPVGIQQS QQPQQHQMQP RGRMFRYPQG RGSGGGPPDV PGRLPYEMPQ
201: HVPIGALATS LANASPEHQR AMLGENLYPL VEQLEAESAA KVTGMLLEMD QTEVLHLLES PEALKAKVAE AMDVLRSVAG GGAAEQLASL NLN
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.