Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022413.1-P | Field mustard | cytosol | 96.58 | 69.73 |
| CDX79295 | Canola | cytosol, plastid | 18.63 | 60.0 |
| CDY08990 | Canola | cytosol | 17.39 | 56.57 |
| CDY67364 | Canola | nucleus | 27.64 | 30.38 |
| CDY54068 | Canola | cytosol | 50.62 | 24.96 |
| CDY51045 | Canola | cytosol | 50.31 | 24.81 |
| KRH50336 | Soybean | cytosol | 46.89 | 23.2 |
| KRH70673 | Soybean | nucleus | 46.58 | 23.15 |
| Solyc01g107870.2.1 | Tomato | extracellular | 45.96 | 23.02 |
| CDY62723 | Canola | cytosol | 44.1 | 23.01 |
| CDX89664 | Canola | cytosol | 43.79 | 22.96 |
| CDY51957 | Canola | cytosol, plastid | 44.1 | 22.94 |
| CDX69025 | Canola | nucleus, plastid | 43.48 | 22.91 |
| CDX75397 | Canola | nucleus, plastid | 43.79 | 22.89 |
| CDX71223 | Canola | cytosol | 45.34 | 22.88 |
| PGSC0003DMT400066245 | Potato | extracellular | 45.34 | 22.71 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 41.61 | 21.93 |
| CDY36634 | Canola | nucleus | 44.1 | 21.88 |
| CDY37229 | Canola | cytosol | 14.29 | 21.6 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 41.61 | 21.0 |
| CDX89562 | Canola | nucleus | 41.61 | 20.78 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 41.93 | 20.74 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 41.93 | 20.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.61 | 20.55 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 41.61 | 20.55 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 41.3 | 20.52 |
| Os04t0504800-01 | Rice | plasma membrane | 41.93 | 20.49 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 41.3 | 20.4 |
| CDY38939 | Canola | nucleus | 40.68 | 20.34 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 41.61 | 20.3 |
| Os09t0115400-01 | Rice | nucleus | 41.61 | 20.24 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 41.61 | 20.24 |
| CDY46079 | Canola | nucleus | 39.44 | 20.19 |
| CDY67921 | Canola | nucleus | 40.37 | 20.16 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 40.06 | 20.06 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 40.99 | 19.88 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 40.99 | 19.85 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 40.99 | 19.85 |
| EES12460 | Sorghum | plastid | 40.68 | 19.73 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 39.44 | 19.51 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 39.44 | 19.51 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 39.44 | 19.51 |
| Zm00001d005276_P007 | Maize | cytosol | 39.13 | 19.27 |
| KXG35258 | Sorghum | cytosol | 39.13 | 19.21 |
| Zm00001d019824_P004 | Maize | cytosol | 38.82 | 19.05 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 41.61 | 18.72 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 44.41 | 18.17 |
| HORVU5Hr1G050560.1 | Barley | plastid | 39.44 | 18.09 |
| CDX79296 | Canola | plastid | 10.25 | 18.03 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 36.34 | 17.33 |
| CDY37935 | Canola | nucleus | 34.47 | 17.05 |
| CDY41472 | Canola | cytosol, plastid | 33.85 | 17.0 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 34.16 | 16.98 |
| CDX72826 | Canola | plastid | 35.71 | 16.81 |
| CDX96344 | Canola | plastid | 35.71 | 16.81 |
| CDY36684 | Canola | plastid | 34.16 | 16.54 |
| CDY03685 | Canola | nucleus | 31.68 | 15.86 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 41.93 | 14.93 |
| CDX91689 | Canola | nucleus | 13.66 | 14.43 |
| CDY57754 | Canola | nucleus | 8.39 | 12.68 |
| CDY56198 | Canola | cytosol | 17.39 | 11.45 |
| CDY67365 | Canola | plastid | 10.25 | 11.3 |
| CDY30168 | Canola | cytosol | 18.63 | 11.15 |
| CDY06734 | Canola | mitochondrion | 8.7 | 9.18 |
| CDX92537 | Canola | nucleus | 9.94 | 7.64 |
| CDY13992 | Canola | nucleus | 9.94 | 7.64 |
| CDY33264 | Canola | mitochondrion, nucleus | 4.66 | 7.5 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 9.63 | 7.21 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 9.63 | 7.21 |
| CDY52067 | Canola | nucleus | 9.32 | 7.16 |
| CDY33092 | Canola | nucleus | 9.32 | 7.06 |
| CDX95176 | Canola | nucleus | 9.01 | 6.92 |
| CDY61476 | Canola | nucleus | 9.01 | 6.92 |
| CDY02486 | Canola | nucleus | 9.01 | 6.9 |
| CDY51403 | Canola | nucleus | 9.01 | 6.9 |
| CDY34835 | Canola | nucleus | 8.39 | 6.87 |
| CDY63384 | Canola | mitochondrion, nucleus | 8.7 | 6.7 |
| CDY16528 | Canola | nucleus | 8.39 | 6.37 |
| CDY29341 | Canola | nucleus | 8.07 | 6.21 |
| CDY32840 | Canola | nucleus | 8.07 | 6.18 |
| CDY50959 | Canola | nucleus | 8.07 | 6.05 |
| CDY68866 | Canola | nucleus | 7.76 | 6.02 |
| CDX95462 | Canola | nucleus | 8.07 | 5.99 |
| CDY18570 | Canola | nucleus | 8.07 | 5.99 |
| CDY28101 | Canola | nucleus | 7.76 | 5.83 |
| CDX82310 | Canola | nucleus | 7.45 | 5.83 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 9.01 | 5.72 |
| CDY22988 | Canola | nucleus | 7.45 | 5.71 |
| CDX81822 | Canola | mitochondrion, nucleus | 9.63 | 5.69 |
| CDX99265 | Canola | nucleus | 7.45 | 5.66 |
| CDX89287 | Canola | nucleus | 7.14 | 5.56 |
| CDY29263 | Canola | nucleus | 7.14 | 5.49 |
| CDX92304 | Canola | nucleus | 7.14 | 5.42 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 6.83 | 5.16 |
| CDY46671 | Canola | nucleus | 6.83 | 5.13 |
| CDY14290 | Canola | nucleus | 6.52 | 5.04 |
| CDY66423 | Canola | nucleus | 6.52 | 4.93 |
| CDY19874 | Canola | nucleus | 5.9 | 4.53 |
| CDY17286 | Canola | nucleus | 5.59 | 4.44 |
| CDY72408 | Canola | plastid | 1.24 | 4.3 |
| CDY66740 | Canola | nucleus | 3.11 | 2.62 |
| CDY67617 | Canola | nucleus | 3.11 | 2.62 |
| CDY43894 | Canola | nucleus | 2.8 | 2.47 |
| CDY59539 | Canola | nucleus | 2.8 | 2.46 |
Protein Annotations
| Gene3D:1.10.1900.10 | Gene3D:3.30.70.330 | MapMan:35.1 | GO:A0A078DSM7 | EnsemblPlants:CDX92325 | ProteinID:CDX92325 |
| ProteinID:CDX92325.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00154054001 |
| InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_HYD |
| PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| UniParc:UPI0004EE43F1 | SEG:seg | : | : | : | : |
Description
BnaA05g20820D
Coordinates
chrLK031871:+:1516065..1520694
Molecular Weight (calculated)
35899.0 Da
IEP (calculated)
9.499
GRAVY (calculated)
-0.493
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSNNCKKFH TLNFSKSLAD EELEKIFGEF GPTTNCLIIR KGEVRQGKSK GYGFVSFENP EDAEKAVEAL NGKKFEDKEW LVTKSKMTYK NGYNLKRGLK
101: YSINISQGLN YLCVKKLHKS VTDEILKDYF SPYGTIISCK VMQDSSGVSR GSGIVAFSKP EEASKAMEEI NWKKKIRKQV YVDLAMSLAN ATPEQQRTML
201: GESLYPMVEQ LEPESAAKIT GMLLEMDQTK VLHLLESFVA LESKVAEATA ILRTVKEQQQ QQHRGGSESA SGSKSSLSPD SKPSLSTSFI SPKPKSLARV
301: NSRLSIGERS VVLLTNRFDS FE
101: YSINISQGLN YLCVKKLHKS VTDEILKDYF SPYGTIISCK VMQDSSGVSR GSGIVAFSKP EEASKAMEEI NWKKKIRKQV YVDLAMSLAN ATPEQQRTML
201: GESLYPMVEQ LEPESAAKIT GMLLEMDQTK VLHLLESFVA LESKVAEATA ILRTVKEQQQ QQHRGGSESA SGSKSSLSPD SKPSLSTSFI SPKPKSLARV
301: NSRLSIGERS VVLLTNRFDS FE
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.