Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18570 | Canola | nucleus | 98.62 | 98.62 |
| Bra037538.1-P | Field mustard | nucleus | 88.71 | 95.53 |
| CDX82310 | Canola | nucleus | 85.48 | 90.05 |
| CDY22988 | Canola | nucleus | 87.1 | 90.0 |
| CDX92304 | Canola | nucleus | 86.87 | 88.92 |
| CDX99265 | Canola | nucleus | 86.18 | 88.21 |
| AT3G19130.1 | Thale cress | nucleus | 82.95 | 82.76 |
| CDY28101 | Canola | nucleus | 76.5 | 77.39 |
| CDY50959 | Canola | nucleus | 76.5 | 77.21 |
| CDY16528 | Canola | nucleus | 75.12 | 76.89 |
| CDY68866 | Canola | nucleus | 73.04 | 76.39 |
| CDY32840 | Canola | nucleus | 73.5 | 75.77 |
| CDY29341 | Canola | nucleus | 72.81 | 75.42 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 59.91 | 62.8 |
| Solyc01g108500.2.1 | Tomato | nucleus | 59.45 | 62.47 |
| PGSC0003DMT400066648 | Potato | nucleus | 59.45 | 61.43 |
| KRH50251 | Soybean | nucleus | 58.99 | 59.4 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 42.63 | 59.29 |
| KRH71168 | Soybean | nucleus | 58.53 | 58.93 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 41.94 | 58.33 |
| Solyc10g050860.1.1 | Tomato | nucleus | 57.14 | 57.94 |
| GSMUA_Achr10P... | Banana | nucleus | 41.47 | 57.32 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 40.32 | 55.91 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 43.09 | 54.68 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 42.86 | 54.39 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 42.63 | 54.09 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 31.57 | 52.9 |
| CDY52067 | Canola | nucleus | 49.54 | 51.31 |
| CDX95176 | Canola | nucleus | 49.31 | 51.07 |
| CDY06734 | Canola | mitochondrion | 35.02 | 49.84 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 45.62 | 49.13 |
| KXG35789 | Sorghum | nucleus | 49.08 | 48.63 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 47.47 | 48.58 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 42.4 | 48.55 |
| Zm00001d020748_P002 | Maize | plasma membrane | 48.16 | 48.27 |
| Os04t0449900-01 | Rice | plastid | 42.86 | 48.06 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 16.13 | 47.62 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 47.47 | 47.58 |
| CDX89287 | Canola | nucleus | 44.01 | 46.14 |
| CDY34835 | Canola | nucleus | 41.47 | 45.8 |
| CDY14290 | Canola | nucleus | 43.78 | 45.56 |
| TraesCS2A01G317700.2 | Wheat | plastid | 44.47 | 45.52 |
| TraesCS2D01G315400.2 | Wheat | plastid | 44.47 | 45.52 |
| TraesCS2B01G335700.1 | Wheat | plastid | 44.01 | 45.48 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 43.55 | 45.32 |
| CDY66423 | Canola | nucleus | 44.47 | 45.31 |
| CDY17286 | Canola | nucleus | 42.17 | 45.19 |
| CDY46671 | Canola | nucleus | 44.24 | 44.76 |
| EES10898 | Sorghum | nucleus | 43.55 | 44.68 |
| CDY29263 | Canola | nucleus | 43.09 | 44.63 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 43.78 | 44.6 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 42.63 | 44.36 |
| CDY19874 | Canola | nucleus | 41.94 | 43.44 |
| EES05289 | Sorghum | plastid | 43.09 | 42.99 |
| Zm00001d050838_P001 | Maize | plastid | 42.4 | 42.79 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 43.32 | 42.63 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 41.71 | 42.39 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 43.09 | 41.01 |
| CDX92537 | Canola | nucleus | 38.48 | 39.86 |
| CDY13992 | Canola | nucleus | 38.48 | 39.86 |
| Zm00001d025551_P002 | Maize | plastid | 41.01 | 39.38 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 42.86 | 39.24 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 38.25 | 38.6 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 38.02 | 38.37 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 41.94 | 35.9 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.27 | 27.27 |
| CDY61476 | Canola | nucleus | 25.35 | 26.25 |
| CDY02486 | Canola | nucleus | 25.35 | 26.19 |
| CDY51403 | Canola | nucleus | 25.12 | 25.95 |
| CDY33092 | Canola | nucleus | 25.35 | 25.88 |
| CDY67365 | Canola | plastid | 14.98 | 22.26 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.27 | 20.92 |
| CDY72408 | Canola | plastid | 3.69 | 17.2 |
| CDY57754 | Canola | nucleus | 7.83 | 15.96 |
| CDY59539 | Canola | nucleus | 13.13 | 15.57 |
| CDX69025 | Canola | nucleus, plastid | 21.66 | 15.38 |
| CDY66740 | Canola | nucleus | 13.36 | 15.22 |
| CDY67617 | Canola | nucleus | 13.36 | 15.22 |
| CDX89664 | Canola | cytosol | 21.43 | 15.15 |
| CDY43894 | Canola | nucleus | 12.67 | 15.11 |
| CDX75397 | Canola | nucleus, plastid | 21.43 | 15.1 |
| CDY62723 | Canola | cytosol | 21.43 | 15.07 |
| CDY38939 | Canola | nucleus | 22.35 | 15.06 |
| CDX89562 | Canola | nucleus | 22.35 | 15.04 |
| CDY51957 | Canola | cytosol, plastid | 21.43 | 15.02 |
| CDY54068 | Canola | cytosol | 22.58 | 15.01 |
| CDY51045 | Canola | cytosol | 22.35 | 14.85 |
| CDX71223 | Canola | cytosol | 21.43 | 14.58 |
| CDY56198 | Canola | cytosol | 16.13 | 14.31 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.45 | 14.0 |
| CDY46079 | Canola | nucleus | 20.28 | 13.99 |
| CDY03685 | Canola | nucleus | 20.51 | 13.84 |
| CDY36634 | Canola | nucleus | 20.28 | 13.56 |
| CDY37935 | Canola | nucleus | 20.28 | 13.52 |
| CDY30168 | Canola | cytosol | 16.59 | 13.38 |
| CDY67921 | Canola | nucleus | 19.82 | 13.33 |
| CDY41472 | Canola | cytosol, plastid | 19.59 | 13.26 |
| CDX72826 | Canola | plastid | 20.74 | 13.16 |
| CDX96344 | Canola | plastid | 20.74 | 13.16 |
| CDY36684 | Canola | plastid | 20.05 | 13.08 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 19.12 | 12.81 |
| CDX79296 | Canola | plastid | 5.3 | 12.57 |
| CDX92325 | Canola | nucleus | 5.99 | 8.07 |
| CDY67364 | Canola | nucleus | 4.84 | 7.17 |
| CDY37229 | Canola | cytosol | 2.3 | 4.69 |
| CDX91689 | Canola | nucleus | 3.0 | 4.26 |
| CDX79295 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDY08990 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:A0A078E2W4 | EnsemblPlants:CDX95462 | ProteinID:CDX95462 | ProteinID:CDX95462.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00101235001 | InterPro:IPR000504 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF6 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI0004EE3D2F |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g33540D
Coordinates
chrLK031889:+:402825..405688
Molecular Weight (calculated)
47856.6 Da
IEP (calculated)
6.657
GRAVY (calculated)
-0.690
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNGSDSS LSTPGATPPI QQPTPPPPQQ WQHQQQHWMT TAAAMQYPGA AAMNMMMMQQ QQMMMYPHQY VPYNQGPYHH PHFQYAPYHQ QQQHQHKPPH
101: ERGSGEDVKT LWVGDLLHWM DETYLHTCFS HTGEVSSVKV IRNKLTCQSE GYGFVEFLTR AAAEEVLQTF SGSVMPNSEQ LFRLNWASFS TGEKRAVENG
201: PELSVFVGDL SPDVTDAMLQ ELFAERYPSV KSAKVVIDSN TGRSKGYGFV RFGDESDRSR ALTEMNGALC SNRQMRVGIA TPKRAVANHQ QHSSQAVIVA
301: GGHGANGSMA NGSQADGESN NSTIFVGGLD PDVTDEDLRQ PFTEFGEVVS VKIPVGKGCG FVQFANRKSA DDAIQSLNGT VIGKNTVRLS WGRTPNKWRG
401: DSGQQWNGGY SRGQGYNNGG YANHQDSNTY PAET
101: ERGSGEDVKT LWVGDLLHWM DETYLHTCFS HTGEVSSVKV IRNKLTCQSE GYGFVEFLTR AAAEEVLQTF SGSVMPNSEQ LFRLNWASFS TGEKRAVENG
201: PELSVFVGDL SPDVTDAMLQ ELFAERYPSV KSAKVVIDSN TGRSKGYGFV RFGDESDRSR ALTEMNGALC SNRQMRVGIA TPKRAVANHQ QHSSQAVIVA
301: GGHGANGSMA NGSQADGESN NSTIFVGGLD PDVTDEDLRQ PFTEFGEVVS VKIPVGKGCG FVQFANRKSA DDAIQSLNGT VIGKNTVRLS WGRTPNKWRG
401: DSGQQWNGGY SRGQGYNNGG YANHQDSNTY PAET
001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
Arabidopsis Description
RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.