Factsheet for TraesCS2B01G335700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G315400.2	Wheat	plastid	100.0	99.06
TraesCS2A01G317700.2	Wheat	plastid	99.52	98.58
EES10898	Sorghum	nucleus	92.14	91.49
Os04t0449900-01	Rice	plastid	83.81	90.96
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	84.29	82.9
Zm00001d025551_P002	Maize	plastid	87.14	80.97
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	81.67	75.22
TraesCS5B01G241400.1	Wheat	nucleus	56.19	69.01
GSMUA_Achr10P...	Banana	nucleus	50.0	66.88
GSMUA_Achr6P10190_001	Banana	nucleus	48.57	65.18
GSMUA_Achr6P09470_001	Banana	nucleus	20.95	59.86
GSMUA_Achr3P01720_001	Banana	mitochondrion	55.48	57.82
Bra027446.1-P	Field mustard	cytosol	43.1	56.56
PGSC0003DMT400020621	Potato	nucleus	52.62	55.81
KRH61258	Soybean	nucleus	54.29	55.75
KRH05723	Soybean	nucleus	54.05	54.96
KRH51956	Soybean	nucleus	52.86	54.01
VIT_18s0001g11080.t01	Wine grape	nucleus	53.57	53.83
KRH15315	Soybean	nucleus	53.81	53.18
Solyc01g108500.2.1	Tomato	nucleus	50.24	51.09
Solyc04g079310.2.1	Tomato	nucleus	54.52	50.78
PGSC0003DMT400066648	Potato	nucleus	49.76	49.76
CDY06734	Canola	mitochondrion	35.95	49.51
AT1G47500.1	Thale cress	nucleus	50.95	49.31
Bra018813.1-P	Field mustard	mitochondrion, nucleus	45.71	49.23
VIT_03s0063g00850.t01	Wine grape	nucleus	48.1	48.79
CDY52067	Canola	nucleus	48.57	48.69
CDX95176	Canola	nucleus	48.57	48.69
AT1G47490.1	Thale cress	nucleus	49.52	48.15
KRH50251	Soybean	nucleus	48.57	47.33
KRH71168	Soybean	nucleus	48.57	47.33
CDY32840	Canola	nucleus	47.38	47.27
CDY16528	Canola	nucleus	47.62	47.17
CDY28101	Canola	nucleus	47.62	46.62
CDY29341	Canola	nucleus	46.43	46.54
CDY50959	Canola	nucleus	47.38	46.28
Bra040663.1-P	Field mustard	nucleus	40.95	46.24
CDX99265	Canola	nucleus	46.19	45.75
CDX92304	Canola	nucleus	46.19	45.75
CDY68866	Canola	nucleus	45.0	45.54
Bra022389.1-P	Field mustard	nucleus	46.19	45.54
TraesCS2B01G495700.1	Wheat	nucleus	46.9	45.18
Solyc10g050860.1.1	Tomato	nucleus	45.95	45.09
CDY22988	Canola	nucleus	45.0	45.0
TraesCS6B01G128900.2	Wheat	plastid	44.29	44.6
CDX95462	Canola	nucleus	45.48	44.01
CDX82310	Canola	nucleus	43.1	43.93
Bra001735.1-P	Field mustard	nucleus	43.1	43.93
AT3G19130.1	Thale cress	nucleus	45.48	43.91
CDY18570	Canola	nucleus	45.24	43.78
TraesCS7B01G199000.1	Wheat	nucleus, plastid	43.81	43.71
AT1G49600.3	Thale cress	nucleus	44.76	41.78
Bra037538.1-P	Field mustard	nucleus	39.52	41.19
TraesCS4B01G289600.1	Wheat	nucleus	43.1	39.43
TraesCS2B01G247400.4	Wheat	nucleus	43.33	39.22
Bra014216.1-P	Field mustard	nucleus	42.38	31.12
TraesCS2B01G195400.1	Wheat	nucleus	24.29	23.78
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	25.24	23.71
TraesCS4B01G148600.1	Wheat	nucleus	23.57	22.25
TraesCS1B01G160900.1	Wheat	nucleus	15.0	17.12
TraesCS4B01G204800.1	Wheat	cytosol	20.24	13.06
TraesCS5B01G159400.1	Wheat	cytosol	20.24	13.06
TraesCS7B01G182800.3	Wheat	cytosol	20.71	12.89
TraesCS2B01G378400.1	Wheat	nucleus	20.0	12.63
TraesCS3B01G090800.1	Wheat	mitochondrion	17.38	11.68
TraesCS2B01G601400.1	Wheat	nucleus	20.71	9.08
TraesCS2B01G599000.1	Wheat	nucleus	20.48	8.84
TraesCS2B01G598800.1	Wheat	nucleus	19.76	7.93

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF4
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:TraesCS2B01G335700	EnsemblPlants:TraesCS2B01G335700.1
TIGR:cd12344	TIGR:cd12345	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2B:+:479852363..479856576

Molecular Weight (calculated)

45672.3 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.660

Length

420 amino acids

Sequence
(BLAST)

001: MQMAATTTES QVAVPPHHPH AHPHPHPPPH HPHPHHHMPQ PRWVVLPYPP PSMVAAPPPP PPQFAKHYAP GPPPPPAAAG RRTPTPPAAG SGGNGCEENK
101: TIWVGDLQYW MDENYLHNCF GPSGEVVTIK VIRNRQTGQS EGYGFVEFFS HASADKALQN FTGHVMPNTD RAFKLNWASY SMGEKRSEVV SDHSIFVGDL
201: AADVTDEMLM ELFASKYRSV KGAKVIIDAN TGRSRGYGFV RFGDDTDKAH AMTEMNGVYC STRPIRVGPA TPRRTSGDSG SSTPGHSDGD SNNRTVYVGG
301: LDPNVSEDEL RKSFAKYGDV ASVKIPLGKQ CGFVQTDAEE ALQGLNGAVI GKQAVRLSWG RSPSHKQSRG DSGNRRNNNN MYYGTPFYGG YGYASPVPHP
401: NMYAPAYGAY PFYGNQQLVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.