Factsheet for TraesCS7B01G182800.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G229400.1
TraesCS4B01G087000.1
TraesCS4D01G084200.1
TraesCS5A01G115200.1
TraesCS5B01G121000.2
TraesCS5D01G126900.3
TraesCS7A01G265700.1
TraesCS7B01G166700.1
TraesCS7D01G269000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	TraesCS4A01G229400.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4B01G087000.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4D01G084200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5A01G115200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5B01G121000.2	AT2G43970.1	21798944
AT4G34110.1	TraesCS5D01G126900.3	AT2G43970.1	21798944
AT4G34110.1	TraesCS7A01G265700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7B01G166700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7D01G269000.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G287900.1	Wheat	cytosol	86.52	91.54
TraesCS7A01G288700.1	Wheat	nucleus	87.26	88.97
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	86.07	81.15
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	78.07	79.85
TraesCS5B01G159400.1	Wheat	cytosol	70.22	72.81
GSMUA_Achr4P20270_001	Banana	cytosol	62.81	65.94
VIT_18s0001g10170.t01	Wine grape	cytosol	62.22	65.62
CDY67365	Canola	plastid	27.56	63.7
KRH70673	Soybean	nucleus	61.04	63.58
KRH50336	Soybean	cytosol	61.19	63.44
KRH15385	Soybean	nucleus	60.74	62.88
Bra013104.1-P	Field mustard	cytosol	57.04	62.5
KRH05656	Soybean	endoplasmic reticulum, nucleus	60.3	62.23
VIT_07s0031g00210.t01	Wine grape	cytosol	60.0	61.93
KRH52023	Soybean	cytosol, endoplasmic reticulum	57.78	61.9
CDX89664	Canola	cytosol	56.3	61.89
KRH61326	Soybean	cytosol, endoplasmic reticulum	57.48	61.59
Bra011488.1-P	Field mustard	cytosol, plastid	54.96	60.52
CDX69025	Canola	nucleus, plastid	54.67	60.39
CDX75397	Canola	nucleus, plastid	54.96	60.23
TraesCS2B01G378400.1	Wheat	nucleus	58.81	59.7
AT4G34110.1	Thale cress	cytosol	55.41	59.46
CDY51957	Canola	cytosol, plastid	54.52	59.45
Bra034603.1-P	Field mustard	cytosol, plastid	54.52	59.45
CDX71223	Canola	cytosol	56.15	59.4
CDY62723	Canola	cytosol	54.22	59.32
CDY54068	Canola	cytosol	57.33	59.26
Bra018797.1-P	Field mustard	cytosol	57.19	59.11
CDY51045	Canola	cytosol	57.19	59.11
CDX79296	Canola	plastid	16.0	59.02
AT1G49760.1	Thale cress	cytosol	58.07	58.42
CDY67364	Canola	nucleus	25.33	58.36
CDY36634	Canola	nucleus	55.41	57.63
Bra015220.1-P	Field mustard	cytosol	49.33	57.61
PGSC0003DMT400012508	Potato	nucleus	10.37	56.45
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	60.15	51.59
GSMUA_Achr7P05430_001	Banana	nucleus	64.74	48.34
Bra022413.1-P	Field mustard	cytosol	28.15	42.6
TraesCS3B01G090800.1	Wheat	mitochondrion	36.3	39.2
CDX92325	Canola	nucleus	17.33	36.34
TraesCS4B01G204800.1	Wheat	cytosol	34.22	35.48
TraesCS5B01G241400.1	Wheat	nucleus	14.52	28.66
TraesCS1B01G160900.1	Wheat	nucleus	14.81	27.17
CDX91689	Canola	nucleus	11.85	26.23
TraesCS2B01G495700.1	Wheat	nucleus	14.22	22.02
TraesCS7B01G199000.1	Wheat	nucleus, plastid	13.63	21.85
TraesCS2B01G195400.1	Wheat	nucleus	13.63	21.45
TraesCS6B01G128900.2	Wheat	plastid	13.19	21.34
TraesCS2B01G335700.1	Wheat	plastid	12.89	20.71
TraesCS4B01G289600.1	Wheat	nucleus	13.63	20.04
TraesCS2B01G247400.4	Wheat	nucleus	13.78	20.04
TraesCS4B01G148600.1	Wheat	nucleus	13.04	19.78
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	12.74	18.86
Solyc06g062680.1.1	Tomato	cytosol	14.81	18.83
TraesCS7B01G138700.1	Wheat	mitochondrion, nucleus	12.15	18.34
TraesCS2B01G601400.1	Wheat	nucleus	14.67	10.33
TraesCS2B01G599000.1	Wheat	nucleus	14.52	10.07
TraesCS2B01G598800.1	Wheat	nucleus	13.93	8.98

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
EnsemblPlantsGene:TraesCS7B01G182800	EnsemblPlants:TraesCS7B01G182800.3	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:286829680..286841232

Molecular Weight (calculated)

73193.5 Da

IEP (calculated)

9.706

GRAVY (calculated)

-0.452

Length

675 amino acids

Sequence
(BLAST)

001: MEGGASPVAG TAAAAAPATA AAFPATSLYV GDLDVSVQDA QLFDVFSQVG SVVSVRVCRD VNTRMSLGYA YVNFSSPADA ARALEMLNFT PVNGKPIRIM
101: YSNRDPSSRK SGAANIFIKN LDKSIDNKAL YDTFSAFGNI LSCKVATEMS GESKGYGFVQ YEQDESAQNA INELNGMLLN DKKVYVGPFV RKQERENVFG
201: SPKFNNVYVK NLSESTTEDN LRELFGNFGP ITSVIVVRGD DGKSRCFGFV NFENPDDAAC AVEDLNGKKF DDKELYVGRA QKKSEREMQL KENFEKSNKE
301: TADRNQGTNL YLKNLDGSVD DDEKLKELFA EFGTITSCKV MRDSNGVNKG SGFVAFKSSE DASRALVAMN GKMVGGKPLY VALAQRKEER RARLQAQFSQ
401: MRPVMPPPVA PRMPMYPPGV PGMGQQLFYG QPPPAFVNPQ PGFGFQQHMI PGMRPGVAPM PNFVMPMVQQ GQQPQRPFGR RAGAGGMQQP MPMGHQQMVP
501: RGGRGGYRYP SGRGMPDAAF RGVGAMVPSL YEMGRMTPGD TGAPQQVSSG ALASALANSP PEQQRLMLGE SLYPLVDQLE HDQAAKVTGA AGILENDLLV
601: PGEATLASVA ATVVAGSSSE NEGSKKVNKK NKKKGNLRGF KLRFNSKRLG RLGKQLSPEK QRIIRNGPFG HLLDI

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.