Factsheet for HORVU7Hr1G063970.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

mitochondrion 1
nucleus 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G014800.1
HORVU5Hr1G029110.1
HORVU7Hr1G056460.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	HORVU4Hr1G014800.1	AT2G43970.1	21798944
AT4G34110.1	HORVU5Hr1G029110.1	AT2G43970.1	21798944
AT4G34110.1	HORVU7Hr1G056460.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G287900.1	Wheat	cytosol	86.73	97.34
TraesCS7A01G288700.1	Wheat	nucleus	89.53	96.83
TraesCS7B01G182800.3	Wheat	cytosol	81.15	86.07
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	79.33	86.06
HORVU5Hr1G050560.1	Barley	plastid	72.21	73.65
VIT_18s0001g10170.t01	Wine grape	cytosol	63.13	70.62
GSMUA_Achr4P20270_001	Banana	cytosol	62.71	69.83
KRH70673	Soybean	nucleus	61.87	68.36
KRH50336	Soybean	cytosol	62.01	68.2
KRH15385	Soybean	nucleus	61.87	67.94
KRH05656	Soybean	endoplasmic reticulum, nucleus	61.45	67.28
VIT_07s0031g00210.t01	Wine grape	cytosol	61.03	66.82
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	56.84	66.61
KRH61326	Soybean	cytosol, endoplasmic reticulum	58.38	66.35
KRH52023	Soybean	cytosol, endoplasmic reticulum	58.38	66.35
Bra013104.1-P	Field mustard	cytosol	56.7	65.91
CDY67364	Canola	nucleus	26.68	65.19
CDX89664	Canola	cytosol	55.87	65.15
Bra011488.1-P	Field mustard	cytosol, plastid	55.73	65.09
CDX69025	Canola	nucleus, plastid	55.45	64.98
CDX75397	Canola	nucleus, plastid	55.73	64.77
CDY67365	Canola	plastid	26.26	64.38
CDY54068	Canola	cytosol	58.52	64.17
CDY51957	Canola	cytosol, plastid	55.45	64.14
Bra034603.1-P	Field mustard	cytosol, plastid	55.45	64.14
AT4G34110.1	Thale cress	cytosol	56.28	64.07
CDY62723	Canola	cytosol	55.17	64.02
Bra018797.1-P	Field mustard	cytosol	58.24	63.86
CDY51045	Canola	cytosol	58.24	63.86
CDX71223	Canola	cytosol	56.42	63.32
AT1G49760.1	Thale cress	cytosol	58.66	62.59
Bra015220.1-P	Field mustard	cytosol	50.14	62.11
CDY36634	Canola	nucleus	55.45	61.17
CDX79296	Canola	plastid	15.36	60.11
PGSC0003DMT400012508	Potato	nucleus	10.2	58.87
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	61.03	55.53
GSMUA_Achr7P05430_001	Banana	nucleus	64.25	50.88
Bra022413.1-P	Field mustard	cytosol	28.91	46.41
CDX92325	Canola	nucleus	18.72	41.61
HORVU4Hr1G059070.1	Barley	cytosol	35.34	38.69
CDX91689	Canola	nucleus	14.39	33.77
HORVU1Hr1G038240.1	Barley	nucleus	14.8	28.8
HORVU4Hr1G075700.5	Barley	nucleus	13.69	23.56
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	13.83	22.86
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	12.57	21.58
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	12.57	21.08
HORVU2Hr1G064650.4	Barley	nucleus	9.92	20.82
HORVU4Hr1G033990.7	Barley	golgi, nucleus	12.71	20.73
HORVU2Hr1G106810.1	Barley	nucleus	13.27	20.56
HORVU2Hr1G031260.2	Barley	nucleus, plastid	13.97	20.12
Solyc06g062680.1.1	Tomato	cytosol	14.8	19.96
HORVU7Hr1G066510.3	Barley	plastid	11.73	19.22
HORVU7Hr1G052090.3	Barley	nucleus	11.45	16.6
HORVU2Hr1G046380.2	Barley	nucleus	10.06	16.33
HORVU2Hr1G123110.1	Barley	nucleus, plastid	14.94	10.07
HORVU2Hr1G122920.2	Barley	nucleus	13.83	9.78

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A287WQ57	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
EnsemblPlantsGene:HORVU7Hr1G063970	EnsemblPlants:HORVU7Hr1G063970.1	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
UniParc:UPI000B472C20	SEG:seg	:	:	:	:

Description

Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A287WQ57]

Coordinates

chrchr7H:-:315905183..315918302

Molecular Weight (calculated)

78125.7 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.399

Length

716 amino acids

Sequence
(BLAST)

001: ERRSWERNPL LPFLPNPRKP KKIRKITPKI SKKIIRNLSF GRIRLSITFP TRLMMAAQVQ ALAAPAAGAM EGVASPAAVA AAAAATATTT AFPATSLYVG
101: DLDVSVQDAQ LFDVFSQVGS VVSVRVCRDV NTRMSLGYAY VNFSSPADAA RALEMLNFTP VNGKPIRIMY SNRDPSSRKS GAANIFIKNL DKSIDNKALY
201: DTFSAFGNIL SCKVATEMSG ESKGYGFVQY EQDESAQNAI NELNGMLLND KKVYVGPFVR KQERENVFGS PKFNNVYVKN LSESTTEDNL KELFGNFGPI
301: TSVIVVRADD GKSRCFGFVN FENPDDAVHA VEDLNGKKFD DKELYVGRAQ KKSEREMQLK ESFEKSNKET ADRNQGTNLY LKNLDGSVDD DEKLKELFAE
401: FGTITSCKVM RDSNGVNKGS GFVAFKSSED ATRALVAMNG KMVGSKPLYV ALAQRKEERR ARLQAQFSQM RPVMPPPVAP RMPMYPPGVP GMGQQLFYGQ
501: PPPAFVNPQP GYGFQQHMIP GMRPGVAPMP NFVMPMVQQG QQPQRPSGRR AGAGGMQQPM PMGHQQMVPR GGRGGYRYAS GRGMPEAAFR GVGGMAPSLY
601: EMGRMTPGDT GAPQQVSSGA LASALANSPP EQQRLMLGES LYPLVDQLEH DQAAKVTGML LEMDQTEVLH LIESPDALKS KVAEAMEVLR SAQQQQTNVP
701: ADQLAALSLS DGFVAS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.