Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G593900.1 | Wheat | nucleus | 88.34 | 87.22 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 88.34 | 85.39 |
| TraesCSU01G037000.1 | Wheat | plastid | 88.04 | 79.41 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 69.17 | 65.85 |
| Os04t0682400-01 | Rice | nucleus | 52.96 | 53.17 |
| KXG27463 | Sorghum | nucleus | 50.99 | 47.96 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 10.38 | 23.92 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 10.57 | 21.53 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 10.18 | 20.85 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 8.0 | 19.47 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 8.2 | 19.17 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 7.81 | 18.5 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 6.72 | 18.48 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 7.61 | 18.47 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 8.2 | 17.97 |
| HORVU7Hr1G066510.3 | Barley | plastid | 7.61 | 17.62 |
| HORVU2Hr1G064650.4 | Barley | nucleus | 5.63 | 16.72 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 9.78 | 16.2 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 9.19 | 14.22 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 9.78 | 13.83 |
| HORVU5Hr1G050560.1 | Barley | plastid | 9.49 | 13.68 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 5.04 | 11.56 |
| Bra039841.1-P | Field mustard | cytosol | 1.48 | 7.04 |
| CDY37229 | Canola | cytosol | 1.48 | 7.04 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:HORVU2Hr1G122920 | EnsemblPlants:HORVU2Hr1G122920.2 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:M0YRK7 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43938 | PANTHER:PTHR43938:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI000296A29D | SEG:seg |
Description
No Description!
Coordinates
chrchr2H:+:754498235..754502096
Molecular Weight (calculated)
110144.0 Da
IEP (calculated)
4.746
GRAVY (calculated)
-0.338
Length
1012 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCKGDLADL LWSAVAAEYE EGSEEEEPFE REFYDDDDYD DNVAEPETKA VDPCEDPLAE EEEASEEEPC DGATPIEDED VSYDEPFVDE LCYEEEDSGE
0101: QDSYYAEPFT DQLCQVEPCD VEVAHEEELV RKKSSPVQAI KKEQNEEEVL KQAPGKGSSH EHKSVPVTDE IELKPFKKRL SVRFATDVSC YTYSAESFGA
0201: AKLEKRKAQF DDQDSHLCKR QEHRVSLPQD GVKLKEVDET NLYVGNLPTS VTYHKLIEMF LPFGRIVRSK VADDRFTGVS QGYGFVKYAE PRSATAAIER
0301: MNGRLVDGKT LEVRLAAAPV PPSVSNPFMQ SVSESWGLPS KEIDPSHLYV CNLPLAMDTL KLLEYFLPFG KVTDIRVPRD HTTGLSKGYG FVKYADSHHA
0401: AQATIHLNGF LVEGKKIDVR VYDTTPPRPK EIDMANLYVC NIPASIDTNK LVELFSPFGK ITHARVAADK GYAFVKFADS KCAAEAIALM NGSLVEGETL
0501: IVRVAGLSST SSSSALQGSP IASPEINKSR LYVANLPRTV NADKLVELFM PFGQISKVII NLEYSLVFYA DVASAIKAVE RMDGYLIGGK RLVVRRSDSS
0601: CATDGAEHAS SQSAAKPMRE IDMANLCVAS IPPTMTGDQL VELFRPFGQI VQSRMFRGYG MVRYENPSSA AAAIDHMDGY LIGGSTLAVR VSGLPNAVDF
0701: NAATNAPLTL QRRPANAAAT SPMDFNAATT NAPPTLQLQQ WPPNGPQRQI DMTNLYVCHL PSYITTERLT ELFLPCGQVT QAKAVTDLCT GACKGYGFVK
0801: FADTFASAVA LSYMNGYTLE GHILEVRIAG VHQSAMGSYL AHLYSQFRVP DPSTTAIGIP TSSCWPYHCA AGSAAAYAAE NQGQGTDAAS QTSQPPESVS
0901: ANSFAEMEWS PVSSHLTDTS QQQLSSHVAD TSSQQQQPSA GWAGPPGFEP PHVAVSTPQP PPSVVPWAGP PGFEPHSVPK KKDAAATMKP SQPCSKVHLA
1001: LSGGSQKRRS VV
0101: QDSYYAEPFT DQLCQVEPCD VEVAHEEELV RKKSSPVQAI KKEQNEEEVL KQAPGKGSSH EHKSVPVTDE IELKPFKKRL SVRFATDVSC YTYSAESFGA
0201: AKLEKRKAQF DDQDSHLCKR QEHRVSLPQD GVKLKEVDET NLYVGNLPTS VTYHKLIEMF LPFGRIVRSK VADDRFTGVS QGYGFVKYAE PRSATAAIER
0301: MNGRLVDGKT LEVRLAAAPV PPSVSNPFMQ SVSESWGLPS KEIDPSHLYV CNLPLAMDTL KLLEYFLPFG KVTDIRVPRD HTTGLSKGYG FVKYADSHHA
0401: AQATIHLNGF LVEGKKIDVR VYDTTPPRPK EIDMANLYVC NIPASIDTNK LVELFSPFGK ITHARVAADK GYAFVKFADS KCAAEAIALM NGSLVEGETL
0501: IVRVAGLSST SSSSALQGSP IASPEINKSR LYVANLPRTV NADKLVELFM PFGQISKVII NLEYSLVFYA DVASAIKAVE RMDGYLIGGK RLVVRRSDSS
0601: CATDGAEHAS SQSAAKPMRE IDMANLCVAS IPPTMTGDQL VELFRPFGQI VQSRMFRGYG MVRYENPSSA AAAIDHMDGY LIGGSTLAVR VSGLPNAVDF
0701: NAATNAPLTL QRRPANAAAT SPMDFNAATT NAPPTLQLQQ WPPNGPQRQI DMTNLYVCHL PSYITTERLT ELFLPCGQVT QAKAVTDLCT GACKGYGFVK
0801: FADTFASAVA LSYMNGYTLE GHILEVRIAG VHQSAMGSYL AHLYSQFRVP DPSTTAIGIP TSSCWPYHCA AGSAAAYAAE NQGQGTDAAS QTSQPPESVS
0901: ANSFAEMEWS PVSSHLTDTS QQQLSSHVAD TSSQQQQPSA GWAGPPGFEP PHVAVSTPQP PPSVVPWAGP PGFEPHSVPK KKDAAATMKP SQPCSKVHLA
1001: LSGGSQKRRS VV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.