Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G593900.1 | Wheat | nucleus | 91.79 | 93.76 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 85.39 | 88.34 |
| TraesCSU01G037000.1 | Wheat | plastid | 91.69 | 85.56 |
| TraesCS2B01G599000.1 | Wheat | nucleus | 75.26 | 80.99 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 69.53 | 75.99 |
| Os04t0682400-01 | Rice | nucleus | 51.96 | 53.97 |
| KXG27463 | Sorghum | nucleus | 50.33 | 48.98 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 10.98 | 25.84 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 10.51 | 25.64 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 10.51 | 24.61 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 7.93 | 24.27 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 9.07 | 21.79 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 8.4 | 20.9 |
| TraesCS6B01G128900.2 | Wheat | plastid | 8.31 | 20.86 |
| TraesCS2B01G335700.1 | Wheat | plastid | 7.93 | 19.76 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 6.59 | 18.75 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 8.02 | 18.1 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 7.83 | 17.86 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 7.74 | 17.76 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 10.32 | 16.24 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 8.98 | 14.44 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 8.69 | 13.98 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 8.98 | 13.93 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 7.74 | 12.96 |
| CDY37229 | Canola | cytosol | 1.34 | 6.57 |
| Bra039841.1-P | Field mustard | cytosol | 1.34 | 6.57 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:Hud_Sxl_RNA | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PRINTS:PR00961 | PFscan:PS50102 | PANTHER:PTHR43938 | PANTHER:PTHR43938:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2B01G598800 | EnsemblPlants:TraesCS2B01G598800.1 |
| TIGR:cd00590 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:781788843..781793742
Molecular Weight (calculated)
113482.0 Da
IEP (calculated)
4.781
GRAVY (calculated)
-0.366
Length
1047 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGCKSDLADQ LQEDGSDGMN AVAAEYEESS EEEEPFEREF YDDDDDDEDN VGEPDTQAVD PCEDPVAEEE EANGDEPCNG VTPLEDEDSS YDEPFVDELC
0101: YEEEDSGEQD SYYAEPFTDQ LCEVEPCDVK VAHAENFVKK KSSPVQAIKK EQNKEKVLKQ ALGKGSSHEH KAVPVNDEIE LKPFKKRLSV RFATDVSCYT
0201: YSAESFGDAK LEKRKAQFDD LNSHLCKRQE HTVSLPHEGV KLKEVDDTNL YVGNLPASVT SHKLIELFLP FGRIVRSKVA DDRFTGVSQG YGFVKYAEPR
0301: SATAAIERMN GRLVDGKTLE VRVAAVPAPP SVSNPSMQSV SETCSLPSKE IDPSYLYVCN LPSAMDTLKL LEYFLPFGKV TDIRMPRDHT TGLSKGYGFV
0401: KYSDSHHAAQ AIIHLNGFLV EGKKMDVRAY DPSPPRPIKE IDMANLYVCN IPVSIDTNKL VELFSPFGKI TQARVAADQG YGFVKFADSQ CAAEAIALMN
0501: GSLVEGETLI VRVAGLSSSA SSSAVQGSPI ASPEINKSRL YVTNLPRTVN ADKLVQLFVP FGQISKVMVN LEYSLVFYAD VASAIKAVER MDGYLIGGKR
0601: LVVRRSDSSC PTDGAEHASS QSAAKPMREI DMANLCVAGI PPTMTGDQLV ELFRPYGQIV QSRMFRGYGM VRYQNPSSAA AAIDHMDGYL IGGSTLAVRV
0701: SGLPNPVDFN AAANAPLTLQ LQQRPANIIA AATNPMDFTA AATNAAPTPQ LQQPRPANGP QKQIDMTNLY VCHLPPYVTT EKLIELFLPC GQITQAKAVV
0801: DLCTGVCKGY GFVKFVDTYA SAVALTYMNG YWLEGHILEV RIAGVHQSAM GGYMAHLYSQ FTVPDPSMTA IGVPTSSCWP YHCAAESVAY TAENQGQGTD
0901: AASQTSQPPE SLSASSSFAP DMEWSPVSST HLADTSSQQQ HLSSHVADTS SQQQHLSSHV ADTSSQQQQQ PSAGWAGPPG FEPSHAHAAV SPPQPPPSAV
1001: PWAGPPGFEP HSIPKKKDAA TATKPSQPCS KVHLAQSGGS QKRRSIV
0101: YEEEDSGEQD SYYAEPFTDQ LCEVEPCDVK VAHAENFVKK KSSPVQAIKK EQNKEKVLKQ ALGKGSSHEH KAVPVNDEIE LKPFKKRLSV RFATDVSCYT
0201: YSAESFGDAK LEKRKAQFDD LNSHLCKRQE HTVSLPHEGV KLKEVDDTNL YVGNLPASVT SHKLIELFLP FGRIVRSKVA DDRFTGVSQG YGFVKYAEPR
0301: SATAAIERMN GRLVDGKTLE VRVAAVPAPP SVSNPSMQSV SETCSLPSKE IDPSYLYVCN LPSAMDTLKL LEYFLPFGKV TDIRMPRDHT TGLSKGYGFV
0401: KYSDSHHAAQ AIIHLNGFLV EGKKMDVRAY DPSPPRPIKE IDMANLYVCN IPVSIDTNKL VELFSPFGKI TQARVAADQG YGFVKFADSQ CAAEAIALMN
0501: GSLVEGETLI VRVAGLSSSA SSSAVQGSPI ASPEINKSRL YVTNLPRTVN ADKLVQLFVP FGQISKVMVN LEYSLVFYAD VASAIKAVER MDGYLIGGKR
0601: LVVRRSDSSC PTDGAEHASS QSAAKPMREI DMANLCVAGI PPTMTGDQLV ELFRPYGQIV QSRMFRGYGM VRYQNPSSAA AAIDHMDGYL IGGSTLAVRV
0701: SGLPNPVDFN AAANAPLTLQ LQQRPANIIA AATNPMDFTA AATNAAPTPQ LQQPRPANGP QKQIDMTNLY VCHLPPYVTT EKLIELFLPC GQITQAKAVV
0801: DLCTGVCKGY GFVKFVDTYA SAVALTYMNG YWLEGHILEV RIAGVHQSAM GGYMAHLYSQ FTVPDPSMTA IGVPTSSCWP YHCAAESVAY TAENQGQGTD
0901: AASQTSQPPE SLSASSSFAP DMEWSPVSST HLADTSSQQQ HLSSHVADTS SQQQHLSSHV ADTSSQQQQQ PSAGWAGPPG FEPSHAHAAV SPPQPPPSAV
1001: PWAGPPGFEP HSIPKKKDAA TATKPSQPCS KVHLAQSGGS QKRRSIV
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.