Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G295700.3 | Wheat | plastid | 69.83 | 94.53 |
TraesCS6B01G128900.2 | Wheat | plastid | 91.21 | 92.09 |
Os08t0190200-00 | Rice | nucleus | 77.91 | 74.21 |
KXG24662 | Sorghum | nucleus | 78.38 | 72.37 |
Zm00001d049416_P001 | Maize | extracellular, nucleus | 77.43 | 71.49 |
TraesCS2B01G495700.1 | Wheat | nucleus | 73.16 | 70.64 |
HORVU7Hr1G066510.3 | Barley | plastid | 73.16 | 70.48 |
KRH51075 | Soybean | endoplasmic reticulum | 57.72 | 61.21 |
KRH20867 | Soybean | nucleus | 59.38 | 61.12 |
KRH02082 | Soybean | nucleus | 57.72 | 60.45 |
KRH11417 | Soybean | nucleus | 58.67 | 60.1 |
PGSC0003DMT400029379 | Potato | nucleus | 55.11 | 58.0 |
Solyc03g031720.2.1 | Tomato | nucleus | 55.11 | 57.28 |
PGSC0003DMT400013036 | Potato | nucleus | 54.39 | 57.25 |
Solyc10g005260.2.1 | Tomato | nucleus | 55.82 | 57.18 |
AT1G11650.2 | Thale cress | nucleus | 54.16 | 56.3 |
CDY34835 | Canola | nucleus | 52.49 | 56.23 |
Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 54.87 | 55.93 |
PGSC0003DMT400042504 | Potato | nucleus | 54.63 | 55.69 |
Bra031774.1-P | Field mustard | nucleus | 51.54 | 55.08 |
TraesCS5B01G241400.1 | Wheat | nucleus | 42.76 | 52.63 |
TraesCS2B01G247400.4 | Wheat | nucleus | 54.87 | 49.78 |
TraesCS4B01G289600.1 | Wheat | nucleus | 51.07 | 46.84 |
TraesCS2B01G335700.1 | Wheat | plastid | 43.71 | 43.81 |
CDY34639 | Canola | nucleus, plastid, vacuole | 52.26 | 43.39 |
TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 42.76 | 39.47 |
TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 23.52 | 22.15 |
TraesCS2B01G195400.1 | Wheat | nucleus | 22.57 | 22.14 |
TraesCS4B01G148600.1 | Wheat | nucleus | 20.43 | 19.33 |
TraesCS1B01G160900.1 | Wheat | nucleus | 12.83 | 14.67 |
TraesCS2B01G378400.1 | Wheat | nucleus | 22.8 | 14.44 |
TraesCS5B01G159400.1 | Wheat | cytosol | 21.38 | 13.82 |
TraesCS7B01G182800.3 | Wheat | cytosol | 21.85 | 13.63 |
TraesCS4B01G204800.1 | Wheat | cytosol | 20.19 | 13.06 |
TraesCS3B01G090800.1 | Wheat | mitochondrion | 16.63 | 11.2 |
TraesCS2B01G601400.1 | Wheat | nucleus | 20.67 | 9.08 |
TraesCS2B01G599000.1 | Wheat | nucleus | 20.43 | 8.84 |
TraesCS2B01G598800.1 | Wheat | nucleus | 20.9 | 8.4 |
VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.66 | 5.6 |
Protein Annotations
EnsemblPlants:TraesCS7B01G199000.1 | EnsemblPlantsGene:TraesCS7B01G199000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr7B:+:356698756..356702504
Molecular Weight (calculated)
46085.4 Da
IEP (calculated)
6.783
GRAVY (calculated)
-0.502
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQPQPGVAA PQWGAIPPPM PPHQLPAPQM WGQPLQPQQV AYGQAQPPPQ AAYYGRPAVP TQAPAGPNEV RTLWIGDLQY WMDENYVYNC FASTGEVQSV
101: KLIRDKQTGQ LQGYGFIEFT SHAGAERALQ TFNRAMMPNV EMAYRLNWAT AGEKRDDGAD YTIFVGDLAA DVTDYVLQET FRVQYPSVKG AKVVTDKLTM
201: RPKGYGFVKF GDPTEQTRAM TEMNGMLCSS RPMRIGPAAN KQKATGVQEK VLLAVPSSQG VQTDNDPSNS TVFVGGLEPN TTEDVLKQLF TPYGEVVHVK
301: IPVGKRCGFV QYASRSSAEE ALLMLQGTMI GGQNVRLSWG RSPSNKQVQS QQDFNQWGGA TANAGYYGYG QGYGAYGYAI QPQDSNMYGY GKYAGYPNYA
401: PQVAQQPQQE PVKSSLIVDA V
101: KLIRDKQTGQ LQGYGFIEFT SHAGAERALQ TFNRAMMPNV EMAYRLNWAT AGEKRDDGAD YTIFVGDLAA DVTDYVLQET FRVQYPSVKG AKVVTDKLTM
201: RPKGYGFVKF GDPTEQTRAM TEMNGMLCSS RPMRIGPAAN KQKATGVQEK VLLAVPSSQG VQTDNDPSNS TVFVGGLEPN TTEDVLKQLF TPYGEVVHVK
301: IPVGKRCGFV QYASRSSAEE ALLMLQGTMI GGQNVRLSWG RSPSNKQVQS QQDFNQWGGA TANAGYYGYG QGYGAYGYAI QPQDSNMYGY GKYAGYPNYA
401: PQVAQQPQQE PVKSSLIVDA V
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.