Factsheet for VIT_18s0001g10190.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g10220.t01	Wine grape	cytosol	57.6	72.0
VIT_18s0001g10210.t01	Wine grape	cytosol	29.6	58.73
VIT_18s0001g10170.t01	Wine grape	cytosol	68.8	13.44
VIT_07s0031g00210.t01	Wine grape	cytosol	64.0	12.23
VIT_18s0001g02490.t01	Wine grape	plastid	52.0	9.86
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	60.0	9.53
VIT_08s0007g04380.t01	Wine grape	cytosol	40.8	8.04
VIT_04s0023g01470.t01	Wine grape	nucleus	12.0	4.02
VIT_06s0004g02040.t01	Wine grape	nucleus	13.6	3.82
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	9.6	2.84
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	9.6	2.52
AT1G11650.2	Thale cress	nucleus	8.0	2.47
PGSC0003DMT400042504	Potato	nucleus	8.0	2.42
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	8.0	2.42
VIT_09s0002g00880.t01	Wine grape	mitochondrion, nucleus	8.0	2.38
CDY34835	Canola	nucleus	7.2	2.29
Bra031774.1-P	Field mustard	nucleus	7.2	2.28
VIT_04s0008g02930.t01	Wine grape	nucleus	7.2	2.27
VIT_18s0001g11080.t01	Wine grape	nucleus	7.2	2.15
Os04t0625800-01	Rice	nucleus	7.2	2.12
Os08t0190200-00	Rice	nucleus	7.2	2.04
KRH51075	Soybean	endoplasmic reticulum	6.4	2.02
KRH02082	Soybean	nucleus	6.4	1.99
Solyc03g031720.2.1	Tomato	nucleus	6.4	1.98
CDY34639	Canola	nucleus, plastid, vacuole	8.0	1.97
Solyc10g005260.2.1	Tomato	nucleus	6.4	1.95
VIT_19s0090g00280.t01	Wine grape	nucleus	7.2	1.94
Zm00001d002244_P003	Maize	nucleus	6.4	1.79
Zm00001d049416_P001	Maize	extracellular, nucleus	6.4	1.75
KXG24662	Sorghum	nucleus	6.4	1.75
PGSC0003DMT400029379	Potato	nucleus	5.6	1.75
PGSC0003DMT400013036	Potato	nucleus	5.6	1.75
KRH20867	Soybean	nucleus	5.6	1.71
TraesCS6D01G081700.2	Wheat	plastid	5.6	1.71
TraesCS6A01G100800.1	Wheat	nucleus	5.6	1.71
KRH11417	Soybean	nucleus	5.6	1.7
TraesCS6B01G128900.2	Wheat	plastid	5.6	1.68
TraesCS7B01G199000.1	Wheat	nucleus, plastid	5.6	1.66
Zm00001d026346_P002	Maize	extracellular	5.6	1.64
KXG27152	Sorghum	nucleus	5.6	1.61
TraesCS7A01G295700.3	Wheat	plastid	4.0	1.61
TraesCS2A01G473000.1	Wheat	nucleus	4.8	1.38
TraesCS2B01G495700.1	Wheat	nucleus	4.8	1.38
TraesCS2D01G472700.1	Wheat	nucleus	4.8	1.38
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	1.6	1.37
VIT_03s0063g00850.t01	Wine grape	nucleus	4.0	1.21
HORVU2Hr1G106810.1	Barley	nucleus	4.0	1.08
HORVU7Hr1G066510.3	Barley	plastid	3.2	0.92

Protein Annotations

ArrayExpress:VIT_18s0001g10190	EMBL:FN595227	EnsemblPlants:VIT_18s0001g10190.t01	EnsemblPlantsGene:VIT_18s0001g10190	Gene3D:1.10.1900.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR002004	InterPro:PABP-dom	InterPro:PABP_HYD
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	PFAM:PF00658	PFscan:PS51309	ProteinID:CCB45820	ProteinID:CCB45820.1
SMART:SM00517	SUPFAM:SSF63570	UniParc:UPI00015C7AC6	UniProt:F6H1B1	MapMan:35.1	:

Description

No Description!

Coordinates

chr18:+:8537469..8539037

Molecular Weight (calculated)

13903.7 Da

IEP (calculated)

6.242

GRAVY (calculated)

-0.430

Length

125 amino acids

Sequence
(BLAST)

001: MNRKSVAAWP SITEQDWTRP CRRTTSGTPF IQPMPISALA SALANATPDQ QRTMLGESLY PLVDQLEHEM AAKVTGMLLD MGQTEFLHLL ESPEALKSKV
101: AEAMDVLRNV AQQQANRPNN YPHCP

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.