CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049416_P001	Maize	extracellular, nucleus	95.39	95.39
TraesCS7A01G295700.3	Wheat	plastid	57.68	84.57
Os08t0190200-00	Rice	nucleus	79.39	81.9
TraesCS6A01G100800.1	Wheat	nucleus	73.25	81.46
TraesCS6D01G081700.2	Wheat	plastid	72.81	80.98
TraesCS6B01G128900.2	Wheat	plastid	73.9	80.82
KXG27152	Sorghum	nucleus	76.1	79.95
TraesCS7B01G199000.1	Wheat	nucleus, plastid	72.37	78.38
KRH51075	Soybean	endoplasmic reticulum	57.02	65.49
HORVU7Hr1G066510.3	Barley	plastid	62.5	65.22
KRH20867	Soybean	nucleus	58.33	65.04
KRH02082	Soybean	nucleus	57.24	64.93
OQU91463	Sorghum	nucleus	57.68	64.3
KRH11417	Soybean	nucleus	57.68	63.99
Solyc03g031720.2.1	Tomato	nucleus	54.61	61.48
PGSC0003DMT400029379	Potato	nucleus	53.73	61.25
CDY34835	Canola	nucleus	52.63	61.07
PGSC0003DMT400013036	Potato	nucleus	53.51	61.0
Solyc10g005260.2.1	Tomato	nucleus	54.82	60.83
AT1G11650.2	Thale cress	nucleus	53.73	60.49
Bra031774.1-P	Field mustard	nucleus	51.75	59.9
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	54.17	59.81
PGSC0003DMT400042504	Potato	nucleus	53.51	59.08
EER95414	Sorghum	nucleus	47.81	52.53
KXG36337	Sorghum	nucleus	54.39	51.99
CDY34639	Canola	nucleus, plastid, vacuole	52.19	46.94
KXG35789	Sorghum	nucleus	44.96	46.8
EES10898	Sorghum	nucleus	43.2	46.57
EES05289	Sorghum	plastid	42.54	44.6
EER95718	Sorghum	nucleus	33.99	42.82
EES15356	Sorghum	nucleus	24.12	24.61
EES08860	Sorghum	nucleus	21.71	22.45
EER94133	Sorghum	nucleus	12.72	16.34
EES12460	Sorghum	plastid	20.39	14.01
KXG35258	Sorghum	cytosol	19.52	13.57
EER89984	Sorghum	plastid	18.64	13.47
KXG40160	Sorghum	nucleus	17.98	11.37
KXG27463	Sorghum	nucleus	21.05	8.92
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.75	6.4

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	UniProt:A0A1B6PG44	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KXG24662	ProteinID:KXG24662	ProteinID:KXG24662.2
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF3	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3007G067700	SUPFAM:SSF54928	UniParc:UPI000B426AB8	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:7538860..7544108

Molecular Weight (calculated)

49210.8 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.625

Length

456 amino acids

Sequence
(BLAST)

001: MMPQQQPGVA PPPPQAAPGA PPHWGGIPPP MAPQHQYGPP PPTQQAPPPP QMWGQAPPPP TQAAYGQAPP PPQAAYGQAP PPPQAAYGQP PPQPQAAYYG
101: APPAPAPAAM AAAPTGPSEV RTLWIGDLQY WMDENYVYGC FASTGEVQNV KLIRDKHTGQ LQGYGFIEFI SRAAAERVLQ TYNGTMMPNV ELPFRLNWAS
201: AGEKRDDTPD YTIFVGDLAA DVTDYVLQET FRAHYPSVKG AKVVTDKLTM RSKGYGFVKF GDPNEQARAM TEMNGMLCSS RPMRIGPAAN KKATGVQEKV
301: PSAQGVQSDN DPNNTTIFVG GLDPNVTEDM LKQVFTPCGE VVHVKIPVGK RCGFVQYANR SSAEEALVIL QGTLVGGQNV RLSWGRSPSN KQVQPQQDSN
401: QWAGANAGYY GYGQGYEAYG YPQSQDPNMY SYGAGAYAGY PNYQQQPVAQ QPQQQQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.