Factsheet for TraesCS6A01G100800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 26579155

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G081700.2	Wheat	plastid	97.8	97.8
TraesCS6B01G128900.2	Wheat	plastid	97.07	95.44
TraesCS7A01G295700.3	Wheat	plastid	72.2	95.18
Os08t0190200-00	Rice	nucleus	80.98	75.11
KXG24662	Sorghum	nucleus	81.46	73.25
Zm00001d049416_P001	Maize	extracellular, nucleus	80.24	72.15
HORVU7Hr1G066510.3	Barley	plastid	75.61	70.94
TraesCS2A01G473000.1	Wheat	nucleus	75.37	70.87
KRH20867	Soybean	nucleus	61.71	61.86
KRH51075	Soybean	endoplasmic reticulum	59.51	61.46
KRH11417	Soybean	nucleus	61.22	61.07
KRH02082	Soybean	nucleus	59.76	60.95
PGSC0003DMT400029379	Potato	nucleus	56.1	57.5
Solyc03g031720.2.1	Tomato	nucleus	56.34	57.04
Solyc10g005260.2.1	Tomato	nucleus	57.07	56.93
AT1G11650.2	Thale cress	nucleus	56.1	56.79
PGSC0003DMT400013036	Potato	nucleus	55.37	56.75
CDY34835	Canola	nucleus	53.66	55.98
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	56.34	55.93
PGSC0003DMT400042504	Potato	nucleus	55.85	55.45
Bra031774.1-P	Field mustard	nucleus	52.93	55.08
TraesCS5A01G243500.1	Wheat	nucleus	43.9	52.63
TraesCS2A01G221900.2	Wheat	nucleus	56.83	50.22
TraesCS4A01G014200.1	Wheat	nucleus	50.73	50.0
TraesCS6A01G204400.1	Wheat	mitochondrion	43.41	46.97
TraesCS2A01G317700.2	Wheat	plastid	45.61	44.1
CDY34639	Canola	nucleus, plastid, vacuole	53.41	43.2
TraesCS2A01G256500.1	Wheat	nucleus	35.12	40.45
TraesCS2A01G169100.1	Wheat	nucleus	22.68	21.73
TraesCS7A01G252200.1	Wheat	mitochondrion, nucleus	23.17	21.25
TraesCS4A01G150000.1	Wheat	mitochondrion	21.22	19.42
TraesCS1A01G143500.1	Wheat	nucleus	13.41	14.95
TraesCS2A01G359000.1	Wheat	cytosol	22.44	13.83
TraesCS7A01G288700.1	Wheat	nucleus	22.2	13.75
TraesCS5A01G161800.2	Wheat	nucleus	21.22	13.36
TraesCS3A01G076800.1	Wheat	mitochondrion, nucleus, plasma membrane, plastid	17.8	13.08
TraesCS4A01G099500.1	Wheat	cytosol	20.24	12.73
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.71	5.6

Protein Annotations

EnsemblPlants:TraesCS6A01G100800.1	EnsemblPlantsGene:TraesCS6A01G100800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR43955
PANTHER:PTHR43955:SF3	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360	SUPFAM:SSF54928
TIGR:cd12344	TIGR:cd12345	TIGR:cd12346	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr6A:-:68511653..68515621

Molecular Weight (calculated)

45067.2 Da

IEP (calculated)

7.526

GRAVY (calculated)

-0.563

Length

410 amino acids

Sequence
(BLAST)

001: MMPQPQPGVA PPQWGAIPPP MPPHHLYAPP PPQMWGQPLP PQQAAYYGRP AAPTQAPAGP NEVRTLWLGD LQYWMDENYV YNCFASTGEV QSVKLIRDKQ
101: TGQLQGYGFI EFTSRAGAER VLQTFNGAMM PNVEMAYRLN WATAGEKHDD GADYTIFVGD LAADVTDYVL QETFRVRYPS VKGAKVVTDK LTMRPKGYGF
201: VKFGDPTEQT RAMTEMNGML CSSRPMRIGP AANKQKATGV QEKVPSSQGV QTDNDPSNST IFVGGLDPKA TEDVLKQVFT PYGDVVHVKI PVGKRCGFVQ
301: YASRSSAEEA LLMLQGTMIG GQNVRLSWGR SPSNKQVQSQ QDFNHWGGAT ANAGYYRYGQ GYGAYGYATQ PQDPNMYGYG TYAGYPNYPQ QVAQQPQQEP
401: VKSSLITDAV

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.