Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G295700.3 | Wheat | plastid | 58.12 | 81.67 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 70.94 | 75.61 |
| TraesCS6D01G081700.2 | Wheat | plastid | 70.48 | 75.12 |
| TraesCS6B01G128900.2 | Wheat | plastid | 70.02 | 73.38 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 70.48 | 73.16 |
| Os08t0190200-00 | Rice | nucleus | 63.62 | 62.9 |
| KXG24662 | Sorghum | nucleus | 65.22 | 62.5 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 64.3 | 61.62 |
| KRH51075 | Soybean | endoplasmic reticulum | 49.89 | 54.91 |
| KRH20867 | Soybean | nucleus | 51.26 | 54.77 |
| KRH02082 | Soybean | nucleus | 50.11 | 54.48 |
| KRH11417 | Soybean | nucleus | 51.03 | 54.26 |
| HORVU2Hr1G106810.1 | Barley | nucleus | 56.75 | 53.68 |
| Solyc03g031720.2.1 | Tomato | nucleus | 47.83 | 51.6 |
| PGSC0003DMT400029379 | Potato | nucleus | 46.91 | 51.25 |
| PGSC0003DMT400013036 | Potato | nucleus | 46.68 | 51.0 |
| AT1G11650.2 | Thale cress | nucleus | 46.91 | 50.62 |
| Solyc10g005260.2.1 | Tomato | nucleus | 47.6 | 50.61 |
| CDY34835 | Canola | nucleus | 45.08 | 50.13 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 47.37 | 50.12 |
| PGSC0003DMT400042504 | Potato | nucleus | 46.91 | 49.64 |
| Bra031774.1-P | Field mustard | nucleus | 44.39 | 49.24 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 45.08 | 47.36 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 40.73 | 41.11 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 38.67 | 40.53 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 38.44 | 39.34 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 45.08 | 38.86 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 35.93 | 35.6 |
| HORVU2Hr1G064650.4 | Barley | nucleus | 27.69 | 35.48 |
| HORVU7Hr1G052090.3 | Barley | nucleus | 20.37 | 18.02 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 20.37 | 17.91 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 17.62 | 17.54 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 12.59 | 14.95 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 18.08 | 12.93 |
| HORVU4Hr1G059070.1 | Barley | cytosol | 18.08 | 12.08 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 19.22 | 11.73 |
| HORVU5Hr1G050560.1 | Barley | plastid | 17.85 | 11.11 |
| HORVU2Hr1G122920.2 | Barley | nucleus | 17.62 | 7.61 |
| HORVU2Hr1G123110.1 | Barley | nucleus, plastid | 17.16 | 7.06 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 0.92 | 3.2 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G066510.3 | EnsemblPlantsGene:HORVU7Hr1G066510 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000B46A561 | UniProt:A0A287WR27 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chrchr7H:+:340740909..340753354
Molecular Weight (calculated)
42076.4 Da
IEP (calculated)
7.384
GRAVY (calculated)
-0.367
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: GRQTSASVLA RWPSHAHTSG SQSNPISSCS CSCFCSRSLS ALGFIVPAAM MPQPQPGVAP PHPASGAPXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXWPSV PTQAPAGPNE ARTLWIGDLQ YWMDENYVYN CFASTGEVQS VKLIRDKQTG QLQGYGFIEF TSRAGAERVL QTFNGAMMPN
201: VEMTYRLNWA TAGEKHDDGA DYTIFVGDLA ADVTDYLLQE TFRAQYPSVK GAKVVTDKLT MRSKGYGFVK FGDPTEQTRA MTEMNGMICS SRPMRIGPAA
301: NKQKANGVQE KVPTAQGIQT DNDPSNSTIF VGGLDPSATE DVLKQVFTPY GEVVHVKIPV GKRCGFVQYA SRSSAEEALL MLQGTMIEGQ NVRLSWGRSP
401: SNKQVQSQQD FNQWGGATAN ASYYGYGQGY GANGYSA
101: XXXXXXXXXX XXXXXXWPSV PTQAPAGPNE ARTLWIGDLQ YWMDENYVYN CFASTGEVQS VKLIRDKQTG QLQGYGFIEF TSRAGAERVL QTFNGAMMPN
201: VEMTYRLNWA TAGEKHDDGA DYTIFVGDLA ADVTDYLLQE TFRAQYPSVK GAKVVTDKLT MRSKGYGFVK FGDPTEQTRA MTEMNGMICS SRPMRIGPAA
301: NKQKANGVQE KVPTAQGIQT DNDPSNSTIF VGGLDPSATE DVLKQVFTPY GEVVHVKIPV GKRCGFVQYA SRSSAEEALL MLQGTMIEGQ NVRLSWGRSP
401: SNKQVQSQQD FNQWGGATAN ASYYGYGQGY GANGYSA
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.