Factsheet for HORVU2Hr1G064650.4

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G266400.1	Wheat	nucleus	81.82	78.37
TraesCS2A01G256500.1	Wheat	nucleus	81.23	77.81
EER95718	Sorghum	nucleus	51.03	48.07
Zm00001d007929_P002	Maize	nucleus	50.44	47.91
GSMUA_Achr6P29410_001	Banana	nucleus	38.12	39.63
GSMUA_Achr9P24980_001	Banana	cytosol	36.66	37.76
Os03t0569900-01	Rice	nucleus	44.28	37.56
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	39.3	32.92
GSMUA_Achr10P...	Banana	nucleus	40.47	31.8
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	37.83	30.94
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	36.95	29.51
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	37.24	29.33
HORVU4Hr1G075700.5	Barley	nucleus	34.02	27.88
HORVU7Hr1G066510.3	Barley	plastid	35.48	27.69
HORVU2Hr1G106810.1	Barley	nucleus	34.31	25.32
HORVU2Hr1G046380.2	Barley	nucleus	28.45	22.0
HORVU7Hr1G052090.3	Barley	nucleus	20.53	14.17
HORVU4Hr1G033990.7	Barley	golgi, nucleus	18.18	14.12
HORVU2Hr1G031260.2	Barley	nucleus, plastid	19.06	13.08
HORVU1Hr1G038240.1	Barley	nucleus	12.61	11.68
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	18.48	10.31
HORVU4Hr1G059070.1	Barley	cytosol	19.65	10.24
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	20.82	9.92
HORVU5Hr1G050560.1	Barley	plastid	19.94	9.69
HORVU2Hr1G123110.1	Barley	nucleus, plastid	18.18	5.83
HORVU2Hr1G122920.2	Barley	nucleus	16.72	5.63

Protein Annotations

EnsemblPlants:HORVU2Hr1G064650.4	EnsemblPlantsGene:HORVU2Hr1G064650	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF9	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B46DB32	UniProt:A0A287I7U9	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chrchr2H:+:439281420..439284942

Molecular Weight (calculated)

38207.8 Da

IEP (calculated)

6.844

GRAVY (calculated)

-0.435

Length

341 amino acids

Sequence
(BLAST)

001: RFRLPSSSSR IRLLGFDPTL PGTMAHAPPR NWAMAPPYHY HGPPQQEQAA PAAEDESGAG SGEQEAESRS LRIRELFPWM DEDYLRSCFT RSPELVTAVI
101: TRNRETKQSE GFGYLTFSDH ATADQILHSY NGQKMPNADR DFSLSWVQYA AADHEHAIYV GGLSFDVTDF MLHHVFKNRY PSVKKAKVIW DVFARRSKGY
201: GFVVFGDVNE CTQAMTEMNG AYCSSRPMRI GPATFKSDFR TQGTYPDSNR NNSRVSAWFD DSCVTDEDLI KAFSPYGELT VKIIEGKSCG FVTYSSRASA
301: EEALTILNGS QLGDNIITVV WARHAPKKQV VFICCLPSST F

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.