Factsheet for HORVU2Hr1G078910.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G317700.2	Wheat	plastid	83.84	84.43
TraesCS2D01G315400.2	Wheat	plastid	83.84	84.43
TraesCS2B01G335700.1	Wheat	plastid	82.9	84.29
Os04t0449900-01	Rice	plastid	76.35	84.24
EES10898	Sorghum	nucleus	78.69	79.43
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	71.66	73.38
Zm00001d025551_P002	Maize	plastid	74.47	70.35
GSMUA_Achr10P...	Banana	nucleus	49.18	66.88
GSMUA_Achr6P10190_001	Banana	nucleus	47.78	65.18
Bra027446.1-P	Field mustard	cytosol	42.86	57.19
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	56.91	56.12
GSMUA_Achr6P09470_001	Banana	nucleus	18.97	55.1
GSMUA_Achr3P01720_001	Banana	mitochondrion	51.99	55.09
PGSC0003DMT400020621	Potato	nucleus	51.05	55.05
KRH61258	Soybean	nucleus	51.05	53.3
KRH05723	Soybean	nucleus	50.35	52.06
VIT_18s0001g11080.t01	Wine grape	nucleus	50.35	51.44
KRH51956	Soybean	nucleus	49.41	51.34
CDY06734	Canola	mitochondrion	36.3	50.82
KRH15315	Soybean	nucleus	50.35	50.59
Solyc01g108500.2.1	Tomato	nucleus	48.01	49.64
Solyc04g079310.2.1	Tomato	nucleus	51.05	48.34
PGSC0003DMT400066648	Potato	nucleus	47.54	48.33
Bra018813.1-P	Field mustard	mitochondrion, nucleus	44.03	48.21
AT1G47500.1	Thale cress	nucleus	48.48	47.7
VIT_03s0063g00850.t01	Wine grape	nucleus	46.14	47.58
CDY52067	Canola	nucleus	46.14	47.02
CDX95176	Canola	nucleus	46.14	47.02
AT1G47490.1	Thale cress	nucleus	47.54	46.99
KRH71168	Soybean	nucleus	46.14	45.71
KRH50251	Soybean	nucleus	46.14	45.71
CDY32840	Canola	nucleus	44.03	44.66
CDY16528	Canola	nucleus	44.26	44.58
Solyc10g050860.1.1	Tomato	nucleus	44.5	44.39
CDY28101	Canola	nucleus	44.5	44.29
CDY29341	Canola	nucleus	43.33	44.15
CDY50959	Canola	nucleus	44.26	43.95
CDX92304	Canola	nucleus	43.09	43.4
CDX99265	Canola	nucleus	43.09	43.4
Bra022389.1-P	Field mustard	nucleus	43.09	43.19
CDY68866	Canola	nucleus	41.92	43.13
CDY22988	Canola	nucleus	42.39	43.1
Bra040663.1-P	Field mustard	nucleus	37.47	43.01
HORVU4Hr1G075700.5	Barley	nucleus	41.69	42.79
CDX82310	Canola	nucleus	40.52	41.99
Bra001735.1-P	Field mustard	nucleus	40.52	41.99
CDX95462	Canola	nucleus	42.39	41.71
AT3G19130.1	Thale cress	nucleus	42.39	41.61
CDY18570	Canola	nucleus	42.15	41.47
HORVU2Hr1G106810.1	Barley	nucleus	44.73	41.34
AT1G49600.3	Thale cress	nucleus	41.69	39.56
Bra037538.1-P	Field mustard	nucleus	36.53	38.71
HORVU7Hr1G066510.3	Barley	plastid	39.34	38.44
HORVU2Hr1G064650.4	Barley	nucleus	29.51	36.95
HORVU2Hr1G046380.2	Barley	nucleus	31.85	30.84
Bra014216.1-P	Field mustard	nucleus	38.64	28.85
HORVU4Hr1G033990.7	Barley	golgi, nucleus	22.48	21.87
HORVU7Hr1G052090.3	Barley	nucleus	24.59	21.26
HORVU2Hr1G031260.2	Barley	nucleus, plastid	23.89	20.52
HORVU1Hr1G038240.1	Barley	nucleus	14.52	16.85
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	18.74	13.09
HORVU4Hr1G059070.1	Barley	cytosol	19.44	12.69
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	21.08	12.57
HORVU5Hr1G050560.1	Barley	plastid	20.14	12.25
HORVU2Hr1G122920.2	Barley	nucleus	18.5	7.81
HORVU2Hr1G123110.1	Barley	nucleus, plastid	19.2	7.71

Protein Annotations

EnsemblPlants:HORVU2Hr1G078910.4	EnsemblPlantsGene:HORVU2Hr1G078910	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF4	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B4758C7	UniProt:A0A287IKA6	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chrchr2H:-:571446349..571450580

Molecular Weight (calculated)

43586.6 Da

IEP (calculated)

8.523

GRAVY (calculated)

-0.583

Length

427 amino acids

Sequence
(BLAST)

001: PLYIQSPHPR APSLSALRNL TRLPQPQATL LGGGGADGDA DGGDHHRITG GRAASPXXXX XXXXXXXXXX XXXXXXXXXA AAGRRTPTPP AAGSGGNGCE
101: ENKTIWVGDL QYWMDENYLH NCFGPSGEVV TIKVIRNRQT GQSEGYGFVE FFSHASADKA LQNFTGHVMP NTDRAFKLNW ASYSMGEKRS EVVSDHSIFV
201: GDLAADVTDE MLMELFGSKY RSVKGAKVII DANTGRSRGY GFVRFGDDTD KAHAMTEMNG VYCSTRPIRI GPATPRRTSG DSGSSTPGHS DGDSNNRTVY
301: VGGLDQNVSE DELRKSFAKY GDVASVKIPL GKQCGFVQYV NRTDAEEALQ GLNGAVIGKQ AVRLSWGRSP SHKQSRGDSG NRRNNNNMYY GTPFYGGYGY
401: ASPVPHPNMY APAYGAYPFY GNQQLVS

Best Arabidopsis Sequence Match ( AT1G49600.1 )
(BLAST)

001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS

Arabidopsis Description

ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.