Factsheet for HORVU2Hr1G046380.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G221900.2	Wheat	nucleus	66.21	62.93
TraesCS2D01G227900.5	Wheat	nucleus	65.76	62.5
TraesCS2B01G247400.4	Wheat	nucleus	65.76	62.5
GSMUA_Achr9P24980_001	Banana	cytosol	43.08	57.4
GSMUA_Achr6P29410_001	Banana	nucleus	42.18	56.71
Zm00001d009512_P001	Maize	mitochondrion	14.51	48.48
HORVU2Hr1G106810.1	Barley	nucleus	49.66	47.4
Zm00001d021633_P006	Maize	nucleus	48.75	46.24
KXG36337	Sorghum	nucleus	49.89	46.12
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	42.18	45.7
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	14.51	45.07
GSMUA_Achr10P...	Banana	nucleus	42.4	43.09
Os07t0516900-01	Rice	plastid	23.13	40.64
Zm00001d010739_P001	Maize	mitochondrion	11.11	39.52
Zm00001d006496_P004	Maize	nucleus	48.53	39.41
HORVU4Hr1G075700.5	Barley	nucleus	34.47	36.54
HORVU7Hr1G066510.3	Barley	plastid	35.6	35.93
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	33.79	34.41
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	31.07	32.85
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	30.84	31.85
HORVU2Hr1G064650.4	Barley	nucleus	22.0	28.45
Zm00001d016252_P001	Maize	nucleus	23.13	27.13
HORVU4Hr1G033990.7	Barley	golgi, nucleus	18.59	18.68
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	11.34	18.66
HORVU7Hr1G052090.3	Barley	nucleus	18.14	16.19
HORVU2Hr1G031260.2	Barley	nucleus, plastid	16.1	14.29
HORVU1Hr1G038240.1	Barley	nucleus	9.52	11.41
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	15.42	11.13
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	16.33	10.06
HORVU5Hr1G050560.1	Barley	plastid	15.19	9.54
HORVU4Hr1G059070.1	Barley	cytosol	12.93	8.72
HORVU2Hr1G122920.2	Barley	nucleus	11.56	5.04
HORVU2Hr1G123110.1	Barley	nucleus, plastid	11.79	4.89

Protein Annotations

EnsemblPlants:HORVU2Hr1G046380.2	EnsemblPlantsGene:HORVU2Hr1G046380	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
ncoils:Coil	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000B485680	UniProt:A0A287HWF6	MapMan:16.9.4	:

Description

No Description!

Coordinates

chrchr2H:+:248059684..248063994

Molecular Weight (calculated)

36337.1 Da

IEP (calculated)

8.532

GRAVY (calculated)

-0.632

Length

441 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX TRRLRRSTER RWLAGLLPEA RISGRCGLEI FSTGWMRPTS TTMMPNVEQV FKLNWASCSA GDKRGDDGSD HTIFVGDLAA DVTDAMLEEI
201: FKATYPSVKG ANVVTDRATG RSKGYGFVRF GDLNEQTRAM TEMNGVPLST RQMRIGPAAN KKNMGAQQTY STNAGYQSSQ VNEAANDPNN TTIFVGGLDS
301: NIDENYLRQV FTPYGEVGYV KIPVGKRCGF VQFTSRACAE QAISALNGSQ IGSSNVRLSW GRSQNKQPPQ QDANQGNGNS YYGYQQGPDA YYGAPNAQDP
401: SMQNYGYSGY GSYDQQQQPP QQQQPPQQQP PQQQXQQAPQ Q

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.