Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G247400.4 | Wheat | nucleus | 98.71 | 98.71 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 98.28 | 98.28 |
| Os07t0516900-01 | Rice | plastid | 41.81 | 77.29 |
| KXG36337 | Sorghum | nucleus | 72.2 | 70.23 |
| Zm00001d009512_P001 | Maize | mitochondrion | 19.83 | 69.7 |
| Zm00001d021633_P006 | Maize | nucleus | 68.97 | 68.82 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 48.71 | 68.28 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 47.63 | 67.38 |
| Zm00001d010739_P001 | Maize | mitochondrion | 17.67 | 66.13 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 62.5 | 65.76 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 20.04 | 65.49 |
| Zm00001d006496_P004 | Maize | nucleus | 71.34 | 60.96 |
| TraesCS6D01G081700.2 | Wheat | plastid | 50.65 | 57.32 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 50.22 | 57.25 |
| GSMUA_Achr10P... | Banana | nucleus | 53.02 | 56.68 |
| TraesCS2D01G472700.1 | Wheat | nucleus | 52.16 | 55.5 |
| Zm00001d016252_P001 | Maize | nucleus | 44.83 | 55.32 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 39.87 | 54.09 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 43.97 | 44.64 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 40.09 | 44.6 |
| TraesCS2D01G315400.2 | Wheat | plastid | 39.44 | 43.16 |
| TraesCS2D01G266400.1 | Wheat | nucleus | 32.33 | 42.13 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 21.55 | 37.31 |
| TraesCS7D01G250300.1 | Wheat | mitochondrion, nucleus | 24.35 | 25.28 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 21.98 | 23.94 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 22.63 | 23.39 |
| TraesCS3D01G076800.1 | Wheat | mitochondrion | 9.48 | 17.67 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 13.58 | 17.12 |
| TraesCS3D01G076700.1 | Wheat | mitochondrion | 15.73 | 16.4 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 20.04 | 14.58 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 19.61 | 13.7 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 19.18 | 13.67 |
| TraesCS4D01G205700.1 | Wheat | cytosol | 17.03 | 12.1 |
| TraesCS2D01G593700.1 | Wheat | nucleus | 19.18 | 9.18 |
| TraesCS2D01G594800.1 | Wheat | nucleus | 17.89 | 8.68 |
| TraesCS2D01G593900.1 | Wheat | nucleus | 18.32 | 8.29 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2D01G227900 | EnsemblPlants:TraesCS2D01G227900.5 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr2D:+:196454577..196458418
Molecular Weight (calculated)
51005.9 Da
IEP (calculated)
5.649
GRAVY (calculated)
-0.926
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTYQPPMN GQHAPQPQAS GAPPPPLQQA PPPQQYYQAP PQYYQQGPPP AMWGHPQQHM PPQYAPPPQQ YAPQPPQQYA PPPQHYAPPP PQYGAQMAGG
101: PPPGGEDIRS LWIGDLQYWM DETYLYNAFA PVGPQQVTSV KIIRNKHTGQ PEGYGFIEFQ SRAAAEYALG TFNGQMMPNV EQVFKLNWAS CSAGDKRGDD
201: GSDHTIFVGD LAADVTDAML EEIFKATYPS VKGANVVTDR ATGRSKGYGF VRFGDLNEQT RAMTEMNGVT LSTRQMRIGP AANKKNMGTQ QTYSTNAGYQ
301: SSQVNEAAND PNNTTIFVGG LDSNIDENYL RQVFTPYGEV GYVKIPVGKR CGFVQFTSRA CAEQAISALN GSQIGSSNVR LSWGRSQNKQ PPQQDANQGN
401: GNSYYGYQQG PEAYYGAPNA QDPSMQNYGY SGYGSYEQQQ QPSQQQQPAQ QQPPQQQQQQ PPQQ
101: PPPGGEDIRS LWIGDLQYWM DETYLYNAFA PVGPQQVTSV KIIRNKHTGQ PEGYGFIEFQ SRAAAEYALG TFNGQMMPNV EQVFKLNWAS CSAGDKRGDD
201: GSDHTIFVGD LAADVTDAML EEIFKATYPS VKGANVVTDR ATGRSKGYGF VRFGDLNEQT RAMTEMNGVT LSTRQMRIGP AANKKNMGTQ QTYSTNAGYQ
301: SSQVNEAAND PNNTTIFVGG LDSNIDENYL RQVFTPYGEV GYVKIPVGKR CGFVQFTSRA CAEQAISALN GSQIGSSNVR LSWGRSQNKQ PPQQDANQGN
401: GNSYYGYQQG PEAYYGAPNA QDPSMQNYGY SGYGSYEQQQ QPSQQQQPAQ QQPPQQQQQQ PPQQ
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.