Factsheet for TraesCS2D01G358000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G229400.1
TraesCS4B01G087000.1
TraesCS4D01G084200.1
TraesCS5A01G115200.1
TraesCS5B01G121000.2
TraesCS5D01G126900.3
TraesCS7A01G265700.1
TraesCS7B01G166700.1
TraesCS7D01G269000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	TraesCS4A01G229400.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4B01G087000.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS4D01G084200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5A01G115200.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS5B01G121000.2	AT2G43970.1	21798944
AT4G34110.1	TraesCS5D01G126900.3	AT2G43970.1	21798944
AT4G34110.1	TraesCS7A01G265700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7B01G166700.1	AT2G43970.1	21798944
AT4G34110.1	TraesCS7D01G269000.1	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G378400.1	Wheat	nucleus	99.7	99.55
TraesCS2A01G359000.1	Wheat	cytosol	98.49	98.35
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	90.21	98.04
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	82.98	84.51
EES12460	Sorghum	plastid	84.19	84.19
Os04t0504800-01	Rice	plasma membrane	83.43	84.07
Zm00001d025801_P005	Maize	cytosol, plastid	82.23	83.74
VIT_18s0001g10170.t01	Wine grape	cytosol	69.43	72.03
GSMUA_Achr9P00990_001	Banana	cytosol	69.58	70.97
KRH70673	Soybean	nucleus	68.98	70.68
GSMUA_Achr4P09890_001	Banana	cytosol	68.98	70.25
KRH50336	Soybean	cytosol	68.67	70.05
KRH15385	Soybean	nucleus	67.92	69.17
VIT_07s0031g00210.t01	Wine grape	cytosol	68.07	69.11
GSMUA_AchrUn_...	Banana	cytosol	67.32	68.56
CDY62723	Canola	cytosol	63.7	68.56
Bra034603.1-P	Field mustard	cytosol, plastid	63.86	68.5
CDY51957	Canola	cytosol, plastid	63.7	68.34
KRH05656	Soybean	endoplasmic reticulum, nucleus	66.57	67.58
Bra011488.1-P	Field mustard	cytosol, plastid	61.6	66.72
CDX69025	Canola	nucleus, plastid	61.14	66.45
TraesCS5D01G167000.1	Wheat	nucleus, unclear	65.06	66.36
CDX75397	Canola	nucleus, plastid	61.45	66.23
AT4G34110.1	Thale cress	cytosol	62.65	66.14
CDY51045	Canola	cytosol	64.76	65.85
Bra018797.1-P	Field mustard	cytosol	64.76	65.85
TraesCS7D01G287900.1	Wheat	cytosol	63.25	65.83
CDX89664	Canola	cytosol	60.84	65.8
CDY54068	Canola	cytosol	64.61	65.7
CDX71223	Canola	cytosol	62.95	65.52
Bra013104.1-P	Field mustard	cytosol	60.24	64.94
KRH52023	Soybean	cytosol, endoplasmic reticulum	61.45	64.76
KRH61326	Soybean	cytosol, endoplasmic reticulum	60.99	64.29
CDY67364	Canola	nucleus	28.31	64.16
AT1G49760.1	Thale cress	cytosol	64.61	63.93
CDY67365	Canola	plastid	27.41	62.33
Bra015220.1-P	Field mustard	cytosol	54.22	62.28
CDY36634	Canola	nucleus	60.84	62.25
CDX79296	Canola	plastid	16.87	61.2
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	66.72	56.29
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	54.52	55.86
PGSC0003DMT400012508	Potato	nucleus	10.24	54.84
TraesCS3D01G076800.1	Wheat	mitochondrion	18.52	49.4
TraesCS3D01G076700.1	Wheat	mitochondrion	30.12	44.94
Bra022413.1-P	Field mustard	cytosol	29.37	43.72
CDX92325	Canola	nucleus	19.88	40.99
TraesCS4D01G205700.1	Wheat	cytosol	36.6	37.21
CDX91689	Canola	nucleus	15.51	33.77
TraesCS1D01G142300.1	Wheat	nucleus	17.02	30.71
TraesCS5D01G250100.1	Wheat	nucleus	13.7	26.61
TraesCS6D01G081700.2	Wheat	plastid	14.16	22.93
TraesCS2D01G176700.1	Wheat	nucleus	14.61	22.77
TraesCS2D01G266400.1	Wheat	nucleus	11.9	22.19
TraesCS4D01G288600.1	Wheat	nucleus	15.21	22.1
TraesCS4D01G150600.2	Wheat	nucleus	14.61	21.6
TraesCS2D01G472700.1	Wheat	nucleus	14.16	21.56
TraesCS7D01G250300.1	Wheat	mitochondrion, nucleus	14.46	21.48
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	13.1	20.86
TraesCS2D01G315400.2	Wheat	plastid	12.8	20.05
TraesCS2D01G227900.5	Wheat	nucleus	13.7	19.61
Solyc06g062680.1.1	Tomato	cytosol	15.51	19.4
TraesCS2D01G593700.1	Wheat	nucleus	16.11	11.03
TraesCS2D01G594800.1	Wheat	nucleus	15.36	10.67
TraesCS2D01G593900.1	Wheat	nucleus	15.96	10.34

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF678	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	EnsemblPlantsGene:TraesCS2D01G358000
EnsemblPlants:TraesCS2D01G358000.1	TIGR:cd12378	TIGR:cd12379	TIGR:cd12380	TIGR:cd12381	SEG:seg

Description

No Description!

Coordinates

chr2D:-:459850015..459854573

Molecular Weight (calculated)

72425.7 Da

IEP (calculated)

9.155

GRAVY (calculated)

-0.428

Length

664 amino acids

Sequence
(BLAST)

001: MAAQVAVANG GGAGPAAAAA VAVVPAPAPA PGGVTQPLPT TSLYVGDLEA NVTDSQLYEL FSQAGQVVSV RVCRDVTSRR SLGYAYVNYS SPMDAARAME
101: ALNFAPLNNK PIRVMYSNRD PSSRRSGSAN IFIKNLDKTI DNKTLHDTFS AFGAILSCKV AMDDIGQSKG FGFVQYEKEE SAQSAMKSLN GMLINDKPVY
201: VGPFLRKQER DNSFDKAKFN NVFVKNLSES TTKDDLVKVF SEYGTITSAV VMIGMDGKSR CFGFVNFESP DDAARAVEEL NGKKINDKEW YVGRAQKKSE
301: REMDLKRRFE QSMKDAADKY QGQNLYLKNL DDGITDDQLR ELFSNFGKIT SCKIMRDQNG VSKGSGFVSF STREEASQAL TEMNGKMISG KPLYVAFAQR
401: KEDRKAMLQA QFSQMRPVPM TPSMTPRLPM YPPMPTLGQQ LFYGQAPPAM IPPQPGYGFQ QQLVPGMRPG GGAHMPNYFV PVVQPGQQGP RPGIRRNGPG
501: SAQGQQTPQP FQQQMVPRGR VYRYPPGPRH MPEVQQMPGV GVGMVQPYDM GSFPVRDAGV SPAPPIGTLT SALANATPEQ QRTILGESLY PLVEKLEHQQ
601: AAKVTGMLLE MDQTEVLHLL ESPEALKSKV AEAMDVLRNV AQQQNPNAPT SQLAGLTLSD GIIS

Best Arabidopsis Sequence Match ( AT4G34110.1 )
(BLAST)

001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS

Arabidopsis Description

PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.