Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71223 | Canola | cytosol | 93.99 | 95.61 |
| Bra015220.1-P | Field mustard | cytosol | 84.28 | 94.64 |
| CDY67364 | Canola | nucleus | 39.29 | 87.03 |
| CDX79295 | Canola | cytosol, plastid | 13.25 | 86.0 |
| CDX89664 | Canola | cytosol | 80.89 | 85.5 |
| CDY08990 | Canola | cytosol | 12.48 | 81.82 |
| CDY67365 | Canola | plastid | 36.52 | 81.16 |
| CDX69025 | Canola | nucleus, plastid | 75.96 | 80.69 |
| CDX75397 | Canola | nucleus, plastid | 76.58 | 80.68 |
| CDY62723 | Canola | cytosol | 76.27 | 80.23 |
| CDY51957 | Canola | cytosol, plastid | 76.27 | 79.97 |
| KRH70673 | Soybean | nucleus | 72.88 | 72.99 |
| KRH50336 | Soybean | cytosol | 73.19 | 72.96 |
| CDY37229 | Canola | cytosol | 23.88 | 72.77 |
| CDY54068 | Canola | cytosol | 71.49 | 71.06 |
| CDX79296 | Canola | plastid | 20.03 | 71.04 |
| CDY51045 | Canola | cytosol | 71.19 | 70.75 |
| PGSC0003DMT400066245 | Potato | extracellular | 69.18 | 69.83 |
| Solyc01g107870.2.1 | Tomato | extracellular | 68.88 | 69.52 |
| GSMUA_Achr9P00990_001 | Banana | cytosol | 63.33 | 63.13 |
| Os09t0115400-01 | Rice | nucleus | 64.25 | 62.99 |
| GSMUA_Achr4P09890_001 | Banana | cytosol | 63.02 | 62.73 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 59.01 | 62.68 |
| KXG35258 | Sorghum | cytosol | 63.33 | 62.65 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 62.71 | 62.52 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 62.56 | 62.37 |
| TraesCS5D01G167000.1 | Wheat | nucleus, unclear | 62.56 | 62.37 |
| GSMUA_AchrUn_... | Banana | cytosol | 62.56 | 62.27 |
| TraesCS7D01G287900.1 | Wheat | cytosol | 61.02 | 62.07 |
| Zm00001d019824_P004 | Maize | cytosol | 62.71 | 62.04 |
| Os08t0314800-02 | Rice | cytosol, nucleus, plasma membrane | 63.02 | 61.97 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 62.25 | 61.96 |
| Zm00001d005276_P007 | Maize | cytosol | 61.94 | 61.47 |
| Os04t0504800-01 | Rice | plasma membrane | 62.25 | 61.3 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 62.25 | 60.84 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 60.25 | 60.81 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 62.25 | 60.75 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 61.02 | 60.74 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 62.1 | 60.6 |
| EES12460 | Sorghum | plastid | 61.94 | 60.54 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 61.63 | 60.42 |
| CDX89562 | Canola | nucleus | 59.32 | 59.69 |
| CDY38939 | Canola | nucleus | 58.71 | 59.16 |
| CDY46079 | Canola | nucleus | 56.86 | 58.66 |
| CDY67921 | Canola | nucleus | 57.63 | 57.98 |
| HORVU5Hr1G050560.1 | Barley | plastid | 62.71 | 57.98 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 68.1 | 56.16 |
| HORVU7Hr1G063970.1 | Barley | cytosol, nucleus, plastid | 61.17 | 55.45 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 57.63 | 55.41 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 49.92 | 50.0 |
| CDY72408 | Canola | plastid | 6.93 | 48.39 |
| CDY41472 | Canola | cytosol, plastid | 47.3 | 47.89 |
| CDY37935 | Canola | nucleus | 47.77 | 47.62 |
| CDY03685 | Canola | nucleus | 46.38 | 46.81 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 46.38 | 46.45 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 64.25 | 46.13 |
| CDX96344 | Canola | plastid | 48.07 | 45.61 |
| CDX72826 | Canola | plastid | 47.92 | 45.47 |
| CDY36684 | Canola | plastid | 46.53 | 45.41 |
| CDX92325 | Canola | nucleus | 21.88 | 44.1 |
| CDY33264 | Canola | mitochondrion, nucleus | 12.33 | 40.0 |
| CDY57754 | Canola | nucleus | 12.79 | 38.97 |
| CDY30168 | Canola | cytosol | 29.28 | 35.32 |
| CDY56198 | Canola | cytosol | 26.04 | 34.56 |
| CDX91689 | Canola | nucleus | 15.25 | 32.46 |
| CDY59539 | Canola | nucleus | 14.64 | 25.96 |
| CDY43894 | Canola | nucleus | 14.33 | 25.55 |
| CDY66740 | Canola | nucleus | 14.95 | 25.46 |
| CDY67617 | Canola | nucleus | 14.95 | 25.46 |
| CDY06734 | Canola | mitochondrion | 11.56 | 24.59 |
| CDY13992 | Canola | nucleus | 15.72 | 24.34 |
| CDX92537 | Canola | nucleus | 15.41 | 23.87 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 15.25 | 23.02 |
| CDY34835 | Canola | nucleus | 13.87 | 22.9 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 15.1 | 22.79 |
| CDY17286 | Canola | nucleus | 14.18 | 22.72 |
| CDY19874 | Canola | nucleus | 14.33 | 22.2 |
| CDX89287 | Canola | nucleus | 13.87 | 21.74 |
| CDY51403 | Canola | nucleus | 13.87 | 21.43 |
| CDY33092 | Canola | nucleus | 14.02 | 21.41 |
| CDY63384 | Canola | mitochondrion, nucleus | 13.71 | 21.29 |
| CDX95176 | Canola | nucleus | 13.71 | 21.24 |
| CDY61476 | Canola | nucleus | 13.71 | 21.24 |
| CDY02486 | Canola | nucleus | 13.71 | 21.19 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 13.87 | 21.13 |
| CDY14290 | Canola | nucleus | 13.56 | 21.1 |
| CDY29263 | Canola | nucleus | 13.56 | 21.0 |
| CDY46671 | Canola | nucleus | 13.87 | 20.98 |
| CDY22988 | Canola | nucleus | 13.56 | 20.95 |
| CDX92304 | Canola | nucleus | 13.56 | 20.75 |
| CDX99265 | Canola | nucleus | 13.56 | 20.75 |
| CDY16528 | Canola | nucleus | 13.56 | 20.75 |
| CDY32840 | Canola | nucleus | 13.41 | 20.67 |
| CDX82310 | Canola | nucleus | 13.1 | 20.63 |
| CDY52067 | Canola | nucleus | 13.25 | 20.53 |
| CDY18570 | Canola | nucleus | 13.71 | 20.51 |
| CDY50959 | Canola | nucleus | 13.56 | 20.47 |
| CDY66423 | Canola | nucleus | 13.41 | 20.42 |
| CDY28101 | Canola | nucleus | 13.41 | 20.28 |
| CDX95462 | Canola | nucleus | 13.56 | 20.28 |
| CDY68866 | Canola | nucleus | 12.79 | 20.0 |
| CDY29341 | Canola | nucleus | 12.79 | 19.81 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 14.18 | 18.15 |
| CDX81822 | Canola | mitochondrion, nucleus | 14.02 | 16.7 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:A0A078HGV7 | UniProt:A0A078HGV7 | EnsemblPlants:CDY36634 |
| ProteinID:CDY36634 | ProteinID:CDY36634.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSBRNA2T00062370001 | InterPro:IPR000504 |
| InterPro:IPR002004 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD |
| PFAM:PF00076 | PFAM:PF00658 | PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 |
| SUPFAM:SSF54928 | SUPFAM:SSF63570 | TIGRFAMs:TIGR01628 | UniParc:UPI0004EEEFDC | SEG:seg | : |
Description
BnaA07g04230DPolyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A078HGV7]
Coordinates
chrLK032380:+:49732..53377
Molecular Weight (calculated)
71036.9 Da
IEP (calculated)
8.662
GRAVY (calculated)
-0.458
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQPQGQN PNGSGKAGGT MSLYVGDLHA NVTDAQLFEA FSQMGQVVTV RVCRDLATRR SLGYGYVNFA TPQDAARAIQ EMNYIPLNGK PVRIMYSHRD
101: PSVRRSGAGN IFIKNLDKSI DHKALHDTFS AFGNIISCKV AVDSSGQSKG YGFVQYETKE SAQKAMAQLN GMLLNDKQVY VGPFLRRQER DSTANVTKFT
201: NVYVKNLAES TTDDALKNTF GEFGNITSAV VMKDGDGKSK GFGFVNFDNA DDAAKAVGTL NGKTFDDKEW FVGRAQKKSE RETELKVRYE QSLREAADKF
301: QSSKLYVKNL DDSISDEKLK ELFTPYGTVT SCKVMRDPNG ISRGSGFVAL STPEEASKAM SEMSGKMIEN KPLYVAVAQR KEDRRAILQA QFSQMRPGAM
401: PPSLGPCMQM YPPGGPGIGQ QVFYAQTPPP MIPSHSAFGY QQQMVPGMRP GGGPMYNFFM PMVQHGQQRP GGRRPGGIQQ SHHHQQQQVP MMQQHPRGRM
501: FRYSQGRGSG GPPDVPGMLP YEMPSNMPLR DPVLSQHVPI GALATSLANA SPEHQRTMLG ENLYPLVEQL EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAG EQLASLNLND DLVSYVFLSS CCIGKIQFS
101: PSVRRSGAGN IFIKNLDKSI DHKALHDTFS AFGNIISCKV AVDSSGQSKG YGFVQYETKE SAQKAMAQLN GMLLNDKQVY VGPFLRRQER DSTANVTKFT
201: NVYVKNLAES TTDDALKNTF GEFGNITSAV VMKDGDGKSK GFGFVNFDNA DDAAKAVGTL NGKTFDDKEW FVGRAQKKSE RETELKVRYE QSLREAADKF
301: QSSKLYVKNL DDSISDEKLK ELFTPYGTVT SCKVMRDPNG ISRGSGFVAL STPEEASKAM SEMSGKMIEN KPLYVAVAQR KEDRRAILQA QFSQMRPGAM
401: PPSLGPCMQM YPPGGPGIGQ QVFYAQTPPP MIPSHSAFGY QQQMVPGMRP GGGPMYNFFM PMVQHGQQRP GGRRPGGIQQ SHHHQQQQVP MMQQHPRGRM
501: FRYSQGRGSG GPPDVPGMLP YEMPSNMPLR DPVLSQHVPI GALATSLANA SPEHQRTMLG ENLYPLVEQL EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAG EQLASLNLND DLVSYVFLSS CCIGKIQFS
001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P
Arabidopsis Description
PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.