Factsheet for Zm00001d019824_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007279_P001
Zm00001d020113_P001
Zm00001d023987_P001
Zm00001d031707_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	Zm00001d007279_P001	AT2G43970.1	21798944
AT4G34110.1	Zm00001d020113_P001	AT2G43970.1	21798944
AT4G34110.1	Zm00001d023987_P001	AT2G43970.1	21798944
AT4G34110.1	Zm00001d031707_P001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005276_P007	Maize	cytosol	94.82	95.11
KXG35258	Sorghum	cytosol	94.82	94.82
Os09t0115400-01	Rice	nucleus	83.38	82.63
TraesCS5B01G159400.1	Wheat	cytosol	80.79	81.41
TraesCS5D01G167000.1	Wheat	nucleus, unclear	80.64	81.26
TraesCS5A01G161800.2	Wheat	nucleus	80.49	81.11
HORVU5Hr1G050560.1	Barley	plastid	80.49	75.21
VIT_18s0001g10170.t01	Wine grape	cytosol	67.84	69.53
GSMUA_Achr4P20270_001	Banana	cytosol	66.31	67.65
KRH15385	Soybean	nucleus	67.23	67.64
KRH70673	Soybean	nucleus	66.62	67.44
KRH50336	Soybean	cytosol	66.92	67.43
VIT_07s0031g00210.t01	Wine grape	cytosol	67.07	67.28
KRH05656	Soybean	endoplasmic reticulum, nucleus	66.46	66.67
CDY67364	Canola	nucleus	29.73	66.55
Bra013104.1-P	Field mustard	cytosol	61.13	65.1
CDX71223	Canola	cytosol	63.11	64.89
CDY62723	Canola	cytosol	60.98	64.83
CDX89664	Canola	cytosol	60.67	64.82
Bra034603.1-P	Field mustard	cytosol, plastid	60.98	64.62
CDY51957	Canola	cytosol, plastid	60.82	64.46
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	64.02	64.42
Bra011488.1-P	Field mustard	cytosol, plastid	60.06	64.27
CDX69025	Canola	nucleus, plastid	59.6	63.99
KRH52023	Soybean	cytosol, endoplasmic reticulum	61.43	63.97
KRH61326	Soybean	cytosol, endoplasmic reticulum	61.28	63.81
Zm00001d025801_P005	Maize	cytosol, plastid	63.41	63.8
CDX75397	Canola	nucleus, plastid	59.91	63.8
CDY54068	Canola	cytosol	63.41	63.71
CDY51045	Canola	cytosol	63.26	63.55
Bra018797.1-P	Field mustard	cytosol	63.26	63.55
AT4G34110.1	Thale cress	cytosol	60.82	63.43
Bra015220.1-P	Field mustard	cytosol	55.64	63.15
AT1G49760.1	Thale cress	cytosol	64.18	62.74
CDY36634	Canola	nucleus	62.04	62.71
CDY67365	Canola	plastid	27.29	61.3
PGSC0003DMT400012508	Potato	nucleus	11.43	60.48
CDX79296	Canola	plastid	16.16	57.92
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	66.31	55.27
GSMUA_Achr7P05430_001	Banana	nucleus	67.07	48.67
Bra022413.1-P	Field mustard	cytosol	30.03	44.17
Zm00001d046487_P001	Maize	cytosol	42.84	43.7
CDX92325	Canola	nucleus	19.05	38.82
Zm00001d047790_P001	Maize	plastid	37.65	33.61
CDX91689	Canola	nucleus	15.55	33.44
Zm00001d014094_P002	Maize	extracellular, plasma membrane	14.94	27.45
Zm00001d032807_P001	Maize	nucleus	14.79	27.02
Zm00001d021149_P001	Maize	cytosol	5.95	23.64
Zm00001d026346_P002	Maize	extracellular	15.4	23.6
Zm00001d013812_P001	Maize	nucleus	13.87	22.41
Zm00001d002244_P003	Maize	nucleus	15.24	22.32
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.72	21.23
Zm00001d026528_P001	Maize	plastid	7.01	20.91
Zm00001d020748_P002	Maize	plasma membrane	13.72	20.79
Zm00001d007929_P002	Maize	nucleus	10.98	20.06
Zm00001d049416_P001	Maize	extracellular, nucleus	13.87	19.96
Zm00001d009512_P001	Maize	mitochondrion	3.96	19.7
Zm00001d025551_P002	Maize	plastid	13.41	19.47
Zm00001d048824_P004	Maize	nucleus	13.26	19.46
Zm00001d021633_P006	Maize	nucleus	13.72	19.35
Zm00001d050838_P001	Maize	plastid	12.65	19.3
Zm00001d031525_P004	Maize	nucleus	13.57	19.1
Solyc06g062680.1.1	Tomato	cytosol	15.4	19.02
Zm00001d010739_P001	Maize	mitochondrion	3.51	18.55
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	13.26	18.35
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	3.96	18.31
Zm00001d049759_P003	Maize	nucleus	12.35	17.69
Zm00001d006496_P004	Maize	nucleus	13.87	16.76
Zm00001d026522_P001	Maize	nucleus	5.79	15.57
Zm00001d016252_P001	Maize	nucleus	7.01	12.23
Zm00001d027869_P002	Maize	nucleus	13.11	11.27
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	3.81	9.33

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100381531	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A1D6I0G1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:ONM53766.1	ProteinID:ONM53769.1	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF679	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004DE82D9	EnsemblPlantsGene:Zm00001d019824	EnsemblPlants:Zm00001d019824_P004	EnsemblPlants:Zm00001d019824_T004
SEG:seg	:	:	:	:	:

Description

Polyadenylate-binding protein 2

Coordinates

chr7:-:65871069..65876989

Molecular Weight (calculated)

71345.0 Da

IEP (calculated)

6.929

GRAVY (calculated)

-0.416

Length

656 amino acids

Sequence
(BLAST)

001: MAAQGQAAAG SASESGGSPA ASAAAAAAAA FPATSLYVGD LHESVQDAQL FDVFSQVGGV VSVRVCRDIN SRKSLGYAYV NYNNTSDAAR ALELLNFTPI
101: NGKPIRIMYS NRDPSSRKSG AGNIFIKNLD KSIDNKALYD TFCAFGNILS CKIATDPSGE SRGYGFVQFE MDESAQSAID KLNGMLINDK KVYVGPFVRK
201: QDRENVSNNI KFSNVYVKNL SDTVTDDELK EMFGKYGTIT SAVVMRDSDG NSRCFGFVNF ENADAAAQAV QELNGKIFND KELYVGRAQK KSEREMELKE
301: KFEKNIQEVA EKFQNTNLYL KNLDDNIDDE KLREIFAEYG NITSCKVMRD SYGVSRGSGF VSFKSAEDAN RALTEMNGKM VGSKPLYVAL AQRKDDRKAK
401: LQAQFSQMRP VAMAPSVGPR MPMFPPSVPG VGQQLFYGQP PPAFINPQAG FAFQQPMMPG MRPGGPMPNF MMPMVQQGQQ PQRPAGRRAG SGGMQQPMPM
501: GSQQQIFPRG GRGYRYATGR GMPDPGMHNV GAVMPSPYEM GGMAMRDAGV SQPVPIGALA TALANASPDQ QRLMLGENLY PLVEQLEREQ AAKVTGMLLE
601: MDQTEVLHLL ESPDALKAKV AEAMEVLRSA QHLQQSNAST EQQLANLSLN DGVLSS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.