Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 27.87 | 46.58 |
| Zm00001d048824_P004 | Maize | nucleus | 81.15 | 44.3 |
| KRH06218 | Soybean | nucleus | 58.2 | 34.13 |
| KRH47641 | Soybean | nucleus | 57.79 | 33.41 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 56.97 | 33.1 |
| Solyc03g122180.2.1 | Tomato | nucleus | 56.56 | 33.09 |
| PGSC0003DMT400058919 | Potato | nucleus | 56.15 | 32.85 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 56.15 | 32.39 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 55.33 | 32.37 |
| AT3G14100.1 | Thale cress | nucleus | 56.56 | 32.32 |
| Solyc06g063000.2.1 | Tomato | nucleus | 54.92 | 32.13 |
| Bra030985.1-P | Field mustard | mitochondrion, nucleus | 54.92 | 32.06 |
| CDY63384 | Canola | mitochondrion, nucleus | 54.92 | 32.06 |
| GSMUA_Achr10P... | Banana | mitochondrion | 55.74 | 32.0 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 54.51 | 31.74 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 55.33 | 31.11 |
| KRH02581 | Soybean | mitochondrion | 52.46 | 30.99 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 53.28 | 30.81 |
| GSMUA_Achr11P... | Banana | nucleus | 55.33 | 30.41 |
| AT1G54080.2 | Thale cress | nucleus | 52.46 | 29.77 |
| CDY51403 | Canola | nucleus | 51.23 | 29.76 |
| Bra037962.1-P | Field mustard | nucleus | 51.23 | 29.69 |
| CDY33092 | Canola | nucleus | 51.64 | 29.65 |
| Bra030908.1-P | Field mustard | nucleus | 50.82 | 29.59 |
| CDY02486 | Canola | nucleus | 50.82 | 29.52 |
| KRH19347 | Soybean | mitochondrion, nucleus | 49.59 | 29.51 |
| CDY61476 | Canola | nucleus | 50.41 | 29.36 |
| PGSC0003DMT400066072 | Potato | nucleus | 47.95 | 28.54 |
| Solyc07g042180.2.1 | Tomato | nucleus | 46.31 | 28.39 |
| PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 44.26 | 26.93 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 54.51 | 26.81 |
| Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 43.44 | 26.43 |
| CDX81822 | Canola | mitochondrion, nucleus | 54.92 | 24.59 |
| Zm00001d049759_P003 | Maize | nucleus | 44.67 | 23.8 |
| Zm00001d031525_P004 | Maize | nucleus | 43.85 | 22.96 |
| Zm00001d013812_P001 | Maize | nucleus | 21.31 | 12.81 |
| Zm00001d007929_P002 | Maize | nucleus | 17.21 | 11.7 |
| Zm00001d026346_P002 | Maize | extracellular | 19.26 | 10.98 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 20.49 | 10.96 |
| Zm00001d020748_P002 | Maize | plasma membrane | 19.26 | 10.85 |
| Zm00001d002244_P003 | Maize | nucleus | 19.67 | 10.71 |
| Zm00001d050838_P001 | Maize | plastid | 18.85 | 10.7 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 18.44 | 10.61 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 19.26 | 9.92 |
| Zm00001d025551_P002 | Maize | plastid | 18.03 | 9.73 |
| Zm00001d021633_P006 | Maize | nucleus | 18.44 | 9.68 |
| Zm00001d026528_P001 | Maize | plastid | 8.61 | 9.55 |
| Zm00001d006496_P004 | Maize | nucleus | 19.67 | 8.84 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 17.21 | 6.44 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 17.21 | 6.44 |
| Zm00001d005276_P007 | Maize | cytosol | 15.98 | 5.96 |
| Zm00001d019824_P004 | Maize | cytosol | 15.57 | 5.79 |
| Zm00001d027869_P002 | Maize | nucleus | 15.16 | 4.85 |
| Zm00001d046487_P001 | Maize | cytosol | 12.7 | 4.82 |
| Zm00001d047790_P001 | Maize | plastid | 13.11 | 4.35 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 6.15 | 4.2 |
| Zm00001d032807_P001 | Maize | nucleus | 6.15 | 4.18 |
| Zm00001d021149_P001 | Maize | cytosol | 2.05 | 3.03 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 1.64 | 2.82 |
| Zm00001d010739_P001 | Maize | mitochondrion | 1.23 | 2.42 |
| Zm00001d009512_P001 | Maize | mitochondrion | 1.23 | 2.27 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 2.05 | 1.87 |
| Zm00001d016252_P001 | Maize | nucleus | 2.87 | 1.86 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | UniProt:A0A1D6JH14 | ProteinID:AQK46944.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0008434B88 | EnsemblPlantsGene:Zm00001d026522 | EnsemblPlants:Zm00001d026522_P001 | EnsemblPlants:Zm00001d026522_T001 | SEG:seg |
Description
Oligouridylate-binding protein 1C
Coordinates
chr10:-:147504707..147524137
Molecular Weight (calculated)
26480.3 Da
IEP (calculated)
7.595
GRAVY (calculated)
-0.372
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRRAHTGDE FRCPDYPASS RDPAPRFFKA RLKNSQQFFM SLYSVMISDD VILDICAESG KENPNDDGPE NNPQFTTVYV GNLPHEATMN DVRLFFHSLG
101: AGSIEEVRVT RDKGFGFVRY STHEEAALAI QMGNGQLIGG RQIKCSWGSK PTPQGTASLP LPPPALAPFS TGVSATDLLA YQRLALSKMA SNHPALMGQH
201: SLKQVAALGI GGGASQSIYD GGFQGINTVT GTTSAQQQQQ LMYY
101: AGSIEEVRVT RDKGFGFVRY STHEEAALAI QMGNGQLIGG RQIKCSWGSK PTPQGTASLP LPPPALAPFS TGVSATDLLA YQRLALSKMA SNHPALMGQH
201: SLKQVAALGI GGGASQSIYD GGFQGINTVT GTTSAQQQQQ LMYY
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.