Factsheet for PGSC0003DMT400012431

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400016249
PGSC0003DMT400056874

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14100.1	PGSC0003DMT400056874	AT1G16500.1	21798944
AT3G14100.1	PGSC0003DMT400016249	AT2G22090.2	12024044
AT3G14100.1	PGSC0003DMT400001613	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063000.2.1	Tomato	nucleus	99.04	99.04
PGSC0003DMT400058919	Potato	nucleus	86.09	86.09
AT3G14100.1	Thale cress	nucleus	82.49	80.56
GSMUA_Achr6P11660_001	Banana	mitochondrion	81.53	80.38
GSMUA_Achr10P...	Banana	mitochondrion	80.58	79.06
Bra030908.1-P	Field mustard	nucleus	78.42	78.04
CDY02486	Canola	nucleus	78.42	77.86
Bra037962.1-P	Field mustard	nucleus	78.42	77.67
CDY61476	Canola	nucleus	77.94	77.57
CDY51403	Canola	nucleus	77.94	77.38
CDY33092	Canola	nucleus	78.66	77.18
PGSC0003DMT400066072	Potato	nucleus	75.06	76.34
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	79.14	76.04
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	70.98	73.82
AT1G54080.2	Thale cress	nucleus	75.54	73.26
GSMUA_Achr11P...	Banana	nucleus	77.7	72.97
Os07t0615400-01	Rice	nucleus	72.42	70.73
TraesCS4B01G148600.1	Wheat	nucleus	74.58	69.89
Os11t0620100-01	Rice	nucleus	73.86	69.84
Zm00001d026528_P001	Maize	plastid	36.69	69.55
Zm00001d048824_P004	Maize	nucleus	74.34	69.35
TraesCS4D01G150600.2	Wheat	nucleus	73.86	68.6
TraesCS2D01G176700.1	Wheat	nucleus	69.78	68.31
EES08860	Sorghum	nucleus	72.18	68.25
TraesCS2A01G169100.1	Wheat	nucleus	69.54	67.76
TraesCS2B01G195400.1	Wheat	nucleus	69.54	67.6
TraesCS4A01G150000.1	Wheat	mitochondrion	72.42	67.41
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	79.86	67.14
HORVU4Hr1G033990.7	Barley	golgi, nucleus	69.54	66.06
VIT_04s0043g01000.t01	Wine grape	cytosol, extracellular, mitochondrion	22.54	64.38
HORVU2Hr1G031260.2	Barley	nucleus, plastid	70.02	58.75
Zm00001d026522_P001	Maize	nucleus	32.37	55.33
PGSC0003DMT400013036	Potato	nucleus	25.9	27.0
PGSC0003DMT400057203	Potato	cytosol	25.9	26.8
PGSC0003DMT400029379	Potato	nucleus	25.18	26.25
PGSC0003DMT400020621	Potato	nucleus	24.7	26.01
PGSC0003DMT400042504	Potato	nucleus	25.66	25.91
PGSC0003DMT400066648	Potato	nucleus	25.9	25.71
PGSC0003DMT400018998	Potato	nucleus	24.22	24.16
PGSC0003DMT400012508	Potato	nucleus	6.0	20.16
PGSC0003DMT400023075	Potato	nucleus	17.03	19.56
PGSC0003DMT400014744	Potato	nucleus	16.79	19.23
PGSC0003DMT400066245	Potato	extracellular	24.22	15.71
PGSC0003DMT400039842	Potato	cytosol	20.38	14.17
PGSC0003DMT400033802	Potato	cytosol	20.38	13.98
PGSC0003DMT400021673	Potato	cytosol	20.86	13.85
PGSC0003DMT400064531	Potato	cytosol	16.07	12.59

Protein Annotations

EntrezGene:102577639	MapMan:16.9.3	Gene3D:3.30.70.330	ProteinID:ABB72820	ProteinID:ABB72820.1	ncoils:Coil
EMBL:DQ268861	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	RefSeq:NP_001275419.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	EnsemblPlantsGene:PGSC0003DMG400004865	PGSC:PGSC0003DMG400004865
EnsemblPlants:PGSC0003DMT400012431	PFscan:PS50102	PANTHER:PTHR44160	PANTHER:PTHR44160:SF2	UniProt:Q2XPV3	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00005EDD7D	SEG:seg	:

Description

Oligouridylate binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004865]

Coordinates

chr6:-:48427627..48433390

Molecular Weight (calculated)

45525.8 Da

IEP (calculated)

7.863

GRAVY (calculated)

-0.410

Length

417 amino acids

Sequence
(BLAST)

001: MQNQRLKQQQ QQALMQQALL QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVFVGN IHPQVTEPLL QEVFSSTGLV EGCKLIRKEK SSYGFIHYYD
101: RRSAALAIVS LNGRHLFGQP IKVNWAFASG QREDTSSHFN IFVGDLSPEV TDAMLFACFS VYPGCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQSAINDL
201: TGKWLGSRQI RCNWATKGAN SNDDKQSSDA KSVVELTNGS SEDGKEAANS DAPENNPQYT TVYVGNIAPE VTQLDLHRYF HALGAGVIEE IRIQRDKGFG
301: FVRYNTHAEA ALAIQMGNTH SVLGGRQIKC SWGNKPTPPG TTSNPLPPPA PTPLGISATD LLAYERQLAM SKMGGVPGLM GQYPLKQASM GMASGASQAI
401: YDGGFQNVAA QQLMYYQ

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.