Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d026528_P001 | Maize | plastid | 46.09 | 93.64 |
| EES08860 | Sorghum | nucleus | 89.93 | 91.16 |
| Os11t0620100-01 | Rice | nucleus | 81.88 | 82.99 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 82.33 | 82.7 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 82.33 | 81.96 |
| Zm00001d026522_P001 | Maize | nucleus | 44.3 | 81.15 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 81.21 | 81.03 |
| KRH06218 | Soybean | nucleus | 71.36 | 76.68 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 74.5 | 75.85 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 71.36 | 75.41 |
| VIT_09s0002g00880.t01 | Wine grape | mitochondrion, nucleus | 70.47 | 75.0 |
| KRH47641 | Soybean | nucleus | 70.69 | 74.88 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 69.35 | 74.34 |
| GSMUA_Achr10P... | Banana | mitochondrion | 70.47 | 74.12 |
| Solyc06g063000.2.1 | Tomato | nucleus | 68.9 | 73.86 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 70.92 | 73.04 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 67.34 | 71.84 |
| Solyc03g122180.2.1 | Tomato | nucleus | 66.89 | 71.7 |
| PGSC0003DMT400058919 | Potato | nucleus | 66.89 | 71.7 |
| VIT_11s0016g00700.t01 | Wine grape | mitochondrion, nucleus | 67.11 | 71.09 |
| Bra030985.1-P | Field mustard | mitochondrion, nucleus | 66.22 | 70.81 |
| CDY63384 | Canola | mitochondrion, nucleus | 66.22 | 70.81 |
| GSMUA_Achr11P... | Banana | nucleus | 69.8 | 70.27 |
| AT3G14100.1 | Thale cress | nucleus | 66.89 | 70.02 |
| PGSC0003DMT400066072 | Potato | nucleus | 63.31 | 69.02 |
| KRH19347 | Soybean | mitochondrion, nucleus | 63.09 | 68.78 |
| Solyc07g042180.2.1 | Tomato | nucleus | 60.85 | 68.34 |
| KRH02581 | Soybean | mitochondrion | 63.09 | 68.28 |
| Bra030908.1-P | Field mustard | nucleus | 63.76 | 68.02 |
| CDY61476 | Canola | nucleus | 63.76 | 68.02 |
| CDY02486 | Canola | nucleus | 63.76 | 67.86 |
| Bra037962.1-P | Field mustard | nucleus | 63.53 | 67.46 |
| CDY51403 | Canola | nucleus | 63.31 | 67.38 |
| CDY33092 | Canola | nucleus | 63.31 | 66.59 |
| PGSC0003DMT400007513 | Potato | mitochondrion, nucleus | 59.28 | 66.08 |
| Solyc12g009230.1.1 | Tomato | mitochondrion, nucleus | 59.06 | 65.84 |
| AT1G54080.2 | Thale cress | nucleus | 62.19 | 64.65 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 70.47 | 63.51 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 18.79 | 57.53 |
| Zm00001d031525_P004 | Maize | nucleus | 59.06 | 56.65 |
| CDX81822 | Canola | mitochondrion, nucleus | 66.22 | 54.31 |
| Zm00001d049759_P003 | Maize | nucleus | 55.26 | 53.93 |
| Zm00001d009512_P001 | Maize | mitochondrion | 9.17 | 31.06 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 9.4 | 29.58 |
| Zm00001d010739_P001 | Maize | mitochondrion | 8.05 | 29.03 |
| Zm00001d013812_P001 | Maize | nucleus | 23.71 | 26.11 |
| Zm00001d021149_P001 | Maize | cytosol | 9.17 | 24.85 |
| Zm00001d007929_P002 | Maize | nucleus | 19.46 | 24.23 |
| Zm00001d020748_P002 | Maize | plasma membrane | 22.82 | 23.56 |
| Zm00001d050838_P001 | Maize | plastid | 22.6 | 23.49 |
| Zm00001d026346_P002 | Maize | extracellular | 21.92 | 22.9 |
| Zm00001d021633_P006 | Maize | nucleus | 23.71 | 22.8 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 21.48 | 22.64 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 22.82 | 22.37 |
| Zm00001d002244_P003 | Maize | nucleus | 21.48 | 21.43 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 22.37 | 21.1 |
| Zm00001d025551_P002 | Maize | plastid | 21.03 | 20.8 |
| Zm00001d006496_P004 | Maize | nucleus | 24.38 | 20.07 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 15.44 | 19.33 |
| Zm00001d032807_P001 | Maize | nucleus | 15.44 | 19.22 |
| Zm00001d016252_P001 | Maize | nucleus | 14.77 | 17.55 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 21.25 | 14.57 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 8.72 | 14.55 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 20.36 | 13.96 |
| Zm00001d005276_P007 | Maize | cytosol | 19.69 | 13.46 |
| Zm00001d019824_P004 | Maize | cytosol | 19.46 | 13.26 |
| Zm00001d046487_P001 | Maize | cytosol | 17.9 | 12.44 |
| Zm00001d047790_P001 | Maize | plastid | 19.46 | 11.84 |
| Zm00001d027869_P002 | Maize | nucleus | 19.69 | 11.53 |
Protein Annotations
| MapMan:16.9.3 | Gene3D:3.30.70.330 | ProteinID:AQK48965.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | UniProt:K7TYT2 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:RRM_dom_euk |
| SMART:SM00360 | SMART:SM00361 | SUPFAM:SSF54928 | UniParc:UPI000220D5F0 | EnsemblPlantsGene:Zm00001d048824 | EnsemblPlants:Zm00001d048824_P004 |
| EnsemblPlants:Zm00001d048824_T004 | SEG:seg | : | : | : | : |
Description
Putative oligouridylate binding protein
Coordinates
chr4:+:6021398..6029788
Molecular Weight (calculated)
48579.2 Da
IEP (calculated)
7.384
GRAVY (calculated)
-0.393
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MHHQQRMKQA AAAAAAAQQQ QLMQQALLLQ QQQQSQAQPP LFPGHHPHPG LLAAPQIEPI VSGNLPPGFD SSTCRSVYVG NIHLQVTDTV LQEVFQSIGP
101: VEGCKLIRKE KSSFGFIDYY DRRYAALAIL SLNGRQLYGQ PIKVNWAYTS TPREDTSGHF NIFVGDLCPE VTDATLFAFF SGYSTCSDAR VMWDQKTGRS
201: RGFGFVSFRN QQDAQSAIND LNGKWLGNRQ IRCNWATKGA NAGEEKQILD TKVDLSNGSS ESGKENPNED GPENNPQFTT VYVGNLPHEA TMNDVHLFFH
301: SLGAGSIEEV RVTRDKGFGF VRYSTHEEAA LAIQMGNGQL IGGRQIKCSW GSKPTPQGTA SLPLPPPALA PFSTGVSATD LLAYQRLALS KMASNHPALM
401: GQHSLKQVAA LGIGGGASQS IYDGGFQGIN TVTGTTSAQQ QQQLMYY
101: VEGCKLIRKE KSSFGFIDYY DRRYAALAIL SLNGRQLYGQ PIKVNWAYTS TPREDTSGHF NIFVGDLCPE VTDATLFAFF SGYSTCSDAR VMWDQKTGRS
201: RGFGFVSFRN QQDAQSAIND LNGKWLGNRQ IRCNWATKGA NAGEEKQILD TKVDLSNGSS ESGKENPNED GPENNPQFTT VYVGNLPHEA TMNDVHLFFH
301: SLGAGSIEEV RVTRDKGFGF VRYSTHEEAA LAIQMGNGQL IGGRQIKCSW GSKPTPQGTA SLPLPPPALA PFSTGVSATD LLAYQRLALS KMASNHPALM
401: GQHSLKQVAA LGIGGGASQS IYDGGFQGIN TVTGTTSAQQ QQQLMYY
001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ
Arabidopsis Description
UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.