Factsheet for Solyc07g042180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066072	Potato	nucleus	96.73	93.9
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	78.14	77.56
VIT_11s0016g00700.t01	Wine grape	mitochondrion, nucleus	82.16	77.49
KRH19347	Soybean	mitochondrion, nucleus	74.87	72.68
Solyc06g063000.2.1	Tomato	nucleus	76.13	72.66
KRH02581	Soybean	mitochondrion	75.38	72.64
GSMUA_Achr6P11660_001	Banana	mitochondrion	75.63	71.16
GSMUA_Achr10P...	Banana	mitochondrion	74.37	69.65
Solyc03g122180.2.1	Tomato	nucleus	72.11	68.82
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	72.86	66.82
Zm00001d026528_P001	Maize	plastid	35.93	65.0
GSMUA_Achr11P...	Banana	nucleus	71.86	64.41
Os11t0620100-01	Rice	nucleus	69.85	63.04
Os07t0615400-01	Rice	nucleus	67.34	62.76
TraesCS4B01G148600.1	Wheat	nucleus	69.6	62.25
EES08860	Sorghum	nucleus	67.84	61.22
HORVU4Hr1G033990.7	Barley	golgi, nucleus	67.34	61.05
Zm00001d048824_P004	Maize	nucleus	68.34	60.85
TraesCS4D01G150600.2	Wheat	nucleus	68.59	60.8
TraesCS4A01G150000.1	Wheat	mitochondrion	67.59	60.04
TraesCS2D01G176700.1	Wheat	nucleus	64.07	59.86
TraesCS2B01G195400.1	Wheat	nucleus	64.07	59.44
TraesCS2A01G169100.1	Wheat	nucleus	63.82	59.35
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	72.36	58.06
HORVU2Hr1G031260.2	Barley	nucleus, plastid	63.82	51.11
Zm00001d026522_P001	Maize	nucleus	28.39	46.31
Solyc07g064510.2.1	Tomato	plastid	26.88	26.1
Solyc03g031720.2.1	Tomato	nucleus	26.13	25.68
Solyc10g005260.2.1	Tomato	nucleus	26.38	25.55
Solyc01g108500.2.1	Tomato	nucleus	25.88	24.94
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	24.87	23.97
Solyc04g079310.2.1	Tomato	nucleus	26.63	23.5
Solyc10g050860.1.1	Tomato	nucleus	24.87	23.13
Solyc11g065880.1.1	Tomato	nucleus	23.87	22.78
Solyc03g118800.2.1	Tomato	nucleus	17.84	19.51
Solyc01g107870.2.1	Tomato	extracellular	24.37	15.09
Solyc12g088720.1.1	Tomato	plastid	23.87	14.26
Solyc09g008620.1.1	Tomato	cytosol	20.85	13.72
Solyc10g085750.1.1	Tomato	nucleus	21.36	13.67
Solyc06g062680.1.1	Tomato	cytosol	10.3	7.72

Protein Annotations

EnsemblPlants:Solyc07g042180.2.1	EnsemblPlantsGene:Solyc07g042180.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44160	PANTHER:PTHR44160:SF4	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928
UniParc:UPI000276BE04	UniProt:K4CE81	MapMan:16.9.3	:	:	:

Description

No Description!

Coordinates

chr7:-:55192519..55199387

Molecular Weight (calculated)

43108.7 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.316

Length

398 amino acids

Sequence
(BLAST)

001: MQQSLYHPAL LAPPQIEPIL SGNLPPGFDS STCRSVYVGN IHPQVTEPLL QEVFSSTGPL EGCKLIKKEK SSYGFVDYFD RRSAALAIVT LNGRNLFGQP
101: IKVNWAYTSA QREDTSSHFN IFVGDLSPEV TDATLYACFS VYPSCSDAKV MWDQKSGRSR GFGFVSFRNQ QEAQSAINEL TGKWLGSRQI RCNWATKGAG
201: GIDEKQNSDA KSVVELTSGT SDDGHDKANE DAPENSPQYT TVYVGNLSPE VTLVDLHRHF HALGAGVIED VRIQRDKGFG FVRYSTNAEA AQAIQLGNAQ
301: FFFGKPIKCS WGSKPTLPGA SSTPLPPPAV GHIPGISVTD IAAYERQLAL ARMGGSQALM HSQALMHSQG QRIGVASQAI YDGGYGSIAA TTQPPMYY

Best Arabidopsis Sequence Match ( AT1G17370.1 )
(BLAST)

001: MQRLKQQQQQ QQVMMQQALM QQQSLYHPGL LAPPQIEPIP SGNLPPGFDP STCRSVYVGN IHIQVTEPLL QEVFAGTGPV ESCKLIRKEK SSYGFVHYFD
101: RRSAGLAILS LNGRHLFGQP IKVNWAYASG QREDTSSHFN IFVGDLSPEV TDAMLFTCFS VYPTCSDARV MWDQKTGRSR GFGFVSFRNQ QDAQTAIDEI
201: TGKWLGSRQI RCNWATKGAT SGEDKQSSDS KSVVELTSGV SEDGKDTTNG EAPENNAQYT TVYVGNLAPE VSQVDLHRHF HSLGAGVIEE VRVQRDKGFG
301: FVRYSTHVEA ALAIQMGNTH SYLSGRQMKC SWGSKPTPAG TASNPLPPPA PAPIPGFSAS DLLAYERQLA MSKMAGMNPM MHHPQGQHAF KQAAMGATGS
401: NQAIYDGGYQ NAQQLMYYQ

Arabidopsis Description

UBP1BOligouridylate-binding protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQI9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.