Factsheet for Solyc11g065880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018998	Potato	nucleus	98.08	97.85
VIT_06s0004g02040.t01	Wine grape	nucleus	78.18	73.26
KRH23136	Soybean	cytosol	71.94	71.6
KRH29709	Soybean	cytosol	67.63	70.32
HORVU4Hr1G075700.5	Barley	nucleus	69.3	69.47
KRH24702	Soybean	nucleus	66.43	69.08
Os03t0174100-02	Rice	nucleus	68.82	68.99
TraesCS4A01G014200.1	Wheat	nucleus	68.59	68.75
GSMUA_Achr8P31320_001	Banana	nucleus	65.71	68.5
EER95414	Sorghum	nucleus	67.39	67.71
AT5G19350.1	Thale cress	cytosol	68.82	67.53
KRH10201	Soybean	mitochondrion, nucleus, plastid	47.48	67.35
CDY13992	Canola	nucleus	64.51	64.2
Bra002230.1-P	Field mustard	nucleus	64.27	63.96
CDX70874	Canola	cytosol, nucleus, peroxisome	65.47	63.49
CDX88893	Canola	cytosol, nucleus, peroxisome	65.23	63.26
CDX92537	Canola	nucleus	63.55	63.25
Bra006502.1-P	Field mustard	nucleus	64.99	63.02
TraesCS4D01G288600.1	Wheat	nucleus	68.59	62.58
TraesCS4B01G289600.1	Wheat	nucleus	68.59	62.31
Solyc03g031720.2.1	Tomato	nucleus	48.68	50.12
Solyc10g005260.2.1	Tomato	nucleus	47.96	48.66
Solyc07g064510.2.1	Tomato	plastid	47.48	48.29
Solyc01g108500.2.1	Tomato	nucleus	47.72	48.18
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	47.24	47.7
Solyc10g050860.1.1	Tomato	nucleus	47.48	46.26
Solyc04g079310.2.1	Tomato	nucleus	47.0	43.46
Zm00001d027869_P002	Maize	nucleus	54.68	29.88
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	23.74	24.69
Solyc07g042180.2.1	Tomato	nucleus	22.78	23.87
Solyc06g063000.2.1	Tomato	nucleus	23.74	23.74
Solyc03g122180.2.1	Tomato	nucleus	23.02	23.02
Solyc03g118800.2.1	Tomato	nucleus	15.59	17.86
Solyc01g107870.2.1	Tomato	extracellular	25.18	16.33
Solyc12g088720.1.1	Tomato	plastid	25.42	15.92
Solyc10g085750.1.1	Tomato	nucleus	23.26	15.59
Solyc09g008620.1.1	Tomato	cytosol	21.82	15.04
Solyc06g062680.1.1	Tomato	cytosol	9.83	7.72

Protein Annotations

EnsemblPlants:Solyc11g065880.1.1	EnsemblPlantsGene:Solyc11g065880.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002769C91	UniProt:K4D9J7	MapMan:16.9.4	:

Description

Polyadenylate-binding protein RBP47B' [Source:Projected from Arabidopsis thaliana (AT5G19350) UniProtKB/Swiss-Prot;Acc:Q8VXZ9]

Coordinates

chr11:-:51457847..51464027

Molecular Weight (calculated)

46344.1 Da

IEP (calculated)

5.249

GRAVY (calculated)

-0.449

Length

417 amino acids

Sequence
(BLAST)

001: MNSQQPYHQP ATLEEVRTLW IGDLPYWADE SYLHSWFAHT AEVLSIKVIR NKITGQPEGY GFVEFGAHAV AERILQSYNG TQIPGTELTF RLNWASFGIG
101: ERRDAGPEHS IFVGDLAPDV TDYLLQETFR THYPSVRGAK VVTDPNTGRT KGYGFVKFAD ETERNRAMSE MNGMYCSTRP MRISAATPKK SNTIQQQYAV
201: AKAVYPPAVY TPTVQTIPVD NDLTNTTVYV GNLDPNLTEE ELRQVFLQFG EIVYVKIPAA KGCGFVQFSA RPSAEEAIQR MQGAVVGQQI VRVSWGRSPT
301: AKQDAGLWGQ PADPSQWNAY YGYGQGYDAY AYGATQDPSL YAYGAYAGYT QYPQQAEGAQ DLASMTGAPP IIEQREEQHD PLAVPDVDRL NNAYLSVHAS
401: TILGRPLWQR TSSFSQV

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.