Factsheet for Solyc04g079310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020621	Potato	nucleus	85.81	97.73
VIT_18s0001g11080.t01	Wine grape	nucleus	70.29	75.84
GSMUA_Achr9P15210_001	Banana	nucleus	51.0	73.72
KRH05723	Soybean	nucleus	66.3	72.4
KRH61258	Soybean	nucleus	64.52	71.15
TraesCS5A01G243500.1	Wheat	nucleus	53.88	71.05
TraesCS5D01G250100.1	Wheat	nucleus	53.88	71.05
TraesCS5B01G241400.1	Wheat	nucleus	53.88	71.05
GSMUA_Achr3P06840_001	Banana	nucleus	49.0	70.83
GSMUA_Achr10P...	Banana	nucleus	49.0	70.38
GSMUA_Achr6P10190_001	Banana	nucleus	48.34	69.65
KRH15315	Soybean	nucleus	65.63	69.65
KRH51956	Soybean	nucleus	63.19	69.34
Bra027446.1-P	Field mustard	cytosol	48.78	68.75
Os02t0567900-01	Rice	cytosol, nucleus	38.14	66.41
Solyc01g108500.2.1	Tomato	nucleus	56.76	61.99
AT1G47490.1	Thale cress	nucleus	58.98	61.57
KXG35789	Sorghum	nucleus	59.65	61.42
CDY06734	Canola	mitochondrion	41.46	61.31
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	58.76	61.2
Zm00001d020748_P002	Maize	plasma membrane	58.76	61.2
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	56.54	60.14
GSMUA_Achr3P01720_001	Banana	mitochondrion	53.66	60.05
Solyc10g050860.1.1	Tomato	nucleus	56.98	60.05
AT1G47500.1	Thale cress	nucleus	57.65	59.91
TraesCS6A01G204400.1	Wheat	mitochondrion	49.89	59.37
CDY52067	Canola	nucleus	54.99	59.19
Os04t0449900-01	Rice	plastid	50.78	59.17
CDX95176	Canola	nucleus	54.77	58.95
GSMUA_Achr6P09470_001	Banana	nucleus	18.63	57.14
EES10898	Sorghum	nucleus	53.22	56.74
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	55.43	56.69
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	51.22	55.4
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	50.55	54.68
TraesCS2B01G335700.1	Wheat	plastid	50.78	54.52
TraesCS2D01G315400.2	Wheat	plastid	51.0	54.25
TraesCS2A01G317700.2	Wheat	plastid	51.0	54.25
EES05289	Sorghum	plastid	51.88	53.79
Zm00001d050838_P001	Maize	plastid	51.0	53.49
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	48.34	51.05
Zm00001d025551_P002	Maize	plastid	51.0	50.88
Solyc03g031720.2.1	Tomato	nucleus	45.68	50.86
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	51.22	50.66
Solyc10g005260.2.1	Tomato	nucleus	45.9	50.37
Solyc07g064510.2.1	Tomato	plastid	45.45	50.0
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	45.45	49.64
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	51.22	48.73
Solyc11g065880.1.1	Tomato	nucleus	43.46	47.0
Solyc07g042180.2.1	Tomato	nucleus	23.5	26.63
Solyc12g009230.1.1	Tomato	mitochondrion, nucleus	23.28	26.18
Solyc06g063000.2.1	Tomato	nucleus	23.73	25.66
Solyc03g122180.2.1	Tomato	nucleus	23.5	25.42
Solyc03g118800.2.1	Tomato	nucleus	14.19	17.58
Solyc01g107870.2.1	Tomato	extracellular	22.62	15.86
Solyc12g088720.1.1	Tomato	plastid	23.06	15.62
Solyc09g008620.1.1	Tomato	cytosol	19.51	14.55
Solyc10g085750.1.1	Tomato	nucleus	19.73	14.31
Solyc06g062680.1.1	Tomato	cytosol	10.42	8.85

Protein Annotations

EnsemblPlants:Solyc04g079310.2.1	EnsemblPlantsGene:Solyc04g079310.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002766FE5	UniProt:K4BV15	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chr4:+:63819164..63824404

Molecular Weight (calculated)

48951.7 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.627

Length

451 amino acids

Sequence
(BLAST)

001: MQSNNGNESQ DNKQPPPPSS QAATSPAAQQ GVSAAAVVPV AAAAPAGAQQ QPWVAMQYPA AAMVMQHPMM PAPHYPPHYM PFHPQHHHHL IHHPPHSPSP
101: HQQGGGGGSN NNENRTIWVG DLHNWMDEDY LRSCFATTNE VASIKVIRNK QTGFSEGYGF VEFFTHASAE KVLQTYSCMT MPNAEQPFRL NWATFSMGDK
201: RANNGSDLSI FVGDLAADVT DTLLLDTFSL KYPSVKAAKV VIDANTGRSK GYGFVRFGDD NERSSAMNEM NGVYCSSRPM RIGAATPRKS SGYPQQYSSQ
301: GGYSNGGPAQ GSQPDADSTN TTIFVGGLDP NVSDEDLRQP FAQYGEIVSV KIPVGKGCGF VQFAKRNDAE EALQKLNGTA IGKQTVRLSW GRNPANKQPR
401: SDFGNQWTGP YYGGHFYDGY GYAFPQPHDP GMYAAAYGAY PVYGTHQQQV S

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.