Factsheet for AT1G47500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G47490.1	Thale cress	nucleus	90.78	91.2
CDY06734	Canola	mitochondrion	49.77	70.82
GSMUA_Achr9P15210_001	Banana	nucleus	50.46	70.19
GSMUA_Achr3P06840_001	Banana	nucleus	48.85	67.95
VIT_18s0001g11080.t01	Wine grape	nucleus	63.59	66.03
TraesCS5B01G241400.1	Wheat	nucleus	51.61	65.5
TraesCS5D01G250100.1	Wheat	nucleus	51.38	65.2
TraesCS5A01G243500.1	Wheat	nucleus	51.38	65.2
GSMUA_Achr6P10190_001	Banana	nucleus	46.77	64.86
GSMUA_Achr10P...	Banana	nucleus	46.77	64.65
KRH61258	Soybean	nucleus	60.6	64.3
PGSC0003DMT400020621	Potato	nucleus	58.53	64.14
KRH51956	Soybean	nucleus	59.22	62.53
KRH05723	Soybean	nucleus	58.99	61.99
Os02t0567900-01	Rice	cytosol, nucleus	36.87	61.78
KRH15315	Soybean	nucleus	59.45	60.71
Solyc04g079310.2.1	Tomato	nucleus	59.91	57.65
KXG35789	Sorghum	nucleus	56.22	55.71
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	55.3	55.43
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	54.15	55.42
TraesCS6A01G204400.1	Wheat	mitochondrion	48.39	55.41
Zm00001d020748_P002	Maize	plasma membrane	54.61	54.73
GSMUA_Achr3P01720_001	Banana	mitochondrion	50.46	54.34
Os04t0449900-01	Rice	plastid	48.39	54.26
GSMUA_Achr6P09470_001	Banana	nucleus	18.2	53.74
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	49.77	51.8
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	49.77	51.8
EES10898	Sorghum	nucleus	50.46	51.77
AT3G19130.1	Thale cress	nucleus	51.84	51.72
TraesCS2A01G317700.2	Wheat	plastid	50.0	51.18
TraesCS2D01G315400.2	Wheat	plastid	50.0	51.18
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	51.84	51.02
TraesCS2B01G335700.1	Wheat	plastid	49.31	50.95
EES05289	Sorghum	plastid	50.0	49.89
Zm00001d050838_P001	Maize	plastid	48.85	49.3
AT1G11650.2	Thale cress	nucleus	45.85	49.14
AT1G49600.3	Thale cress	nucleus	50.92	49.11
AT5G54900.1	Thale cress	nucleus	43.55	48.84
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	47.7	48.48
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	50.0	47.59
AT4G27000.1	Thale cress	nucleus	44.93	46.99
Zm00001d025551_P002	Maize	plastid	48.39	46.46
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	48.85	44.73
AT5G19350.1	Thale cress	cytosol	42.17	43.06
AT3G14100.1	Thale cress	nucleus	23.04	23.42
AT1G17370.1	Thale cress	mitochondrion, nucleus	22.58	23.39
AT1G54080.2	Thale cress	nucleus	22.81	23.02
AT2G18510.1	Thale cress	nucleus	14.29	17.08
AT4G34110.1	Thale cress	cytosol	24.42	16.85
AT1G34140.1	Thale cress	nucleus	15.67	16.71
AT2G23350.1	Thale cress	nucleus	23.5	15.41
AT1G22760.1	Thale cress	nucleus, plastid	23.27	15.3
AT1G49760.1	Thale cress	cytosol	23.5	15.2
AT1G71770.1	Thale cress	cytosol, plastid	22.12	14.08
AT3G16380.1	Thale cress	nucleus	17.05	13.78
AT2G36660.1	Thale cress	cytosol, plastid	19.12	13.63

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EntrezGene:841159	ProteinID:AAD46037.1	ProteinID:AEE32178.1	EMBL:AK227406
ProteinID:ANM58672.1	ArrayExpress:AT1G47500	EnsemblPlantsGene:AT1G47500	RefSeq:AT1G47500	TAIR:AT1G47500	RefSeq:AT1G47500-TAIR-G
EnsemblPlants:AT1G47500.1	TAIR:AT1G47500.1	Symbol:ATRBP47C'	Unigene:At.64064	EMBL:BT030029	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006950
GO:GO:0008143	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010494
GO:GO:0034605	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_001321088.1	RefSeq:NP_175181.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0025195	PO:PO:0025281
PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	UniProt:Q9SX80	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000009DB42	SEG:seg	:	:

Description

RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]

Coordinates

chr1:+:17432433..17435124

Molecular Weight (calculated)

48634.7 Da

IEP (calculated)

6.279

GRAVY (calculated)

-0.782

Length

434 amino acids

Sequence
(BLAST)

001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.