Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G241400.1 | Wheat | nucleus | 72.88 | 90.35 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 72.64 | 90.06 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 72.64 | 90.06 |
| KXG35789 | Sorghum | nucleus | 92.22 | 89.27 |
| Zm00001d020748_P002 | Maize | plasma membrane | 90.33 | 88.45 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 61.08 | 83.01 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 83.49 | 81.76 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 58.96 | 80.13 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 73.82 | 70.98 |
| PGSC0003DMT400020621 | Potato | nucleus | 58.49 | 62.63 |
| KRH05723 | Soybean | nucleus | 60.85 | 62.47 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 61.56 | 62.44 |
| KRH61258 | Soybean | nucleus | 59.91 | 62.1 |
| Bra027446.1-P | Field mustard | cytosol | 46.7 | 61.88 |
| KRH15315 | Soybean | nucleus | 60.61 | 60.47 |
| KRH51956 | Soybean | nucleus | 57.55 | 59.37 |
| Zm00001d050838_P001 | Maize | plastid | 59.67 | 58.84 |
| Zm00001d025551_P002 | Maize | plastid | 62.03 | 58.19 |
| Solyc04g079310.2.1 | Tomato | nucleus | 60.14 | 56.54 |
| CDY06734 | Canola | mitochondrion | 40.33 | 56.07 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 54.72 | 56.04 |
| AT1G47500.1 | Thale cress | nucleus | 55.42 | 54.15 |
| AT1G47490.1 | Thale cress | nucleus | 54.95 | 53.94 |
| Zm00001d009512_P001 | Maize | mitochondrion | 16.75 | 53.79 |
| CDY52067 | Canola | nucleus | 52.59 | 53.22 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 59.43 | 53.16 |
| Solyc01g108500.2.1 | Tomato | nucleus | 51.65 | 53.03 |
| CDX95176 | Canola | nucleus | 52.36 | 52.98 |
| KRH50251 | Soybean | nucleus | 53.54 | 52.67 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 48.35 | 52.56 |
| KRH71168 | Soybean | nucleus | 53.3 | 52.44 |
| PGSC0003DMT400066648 | Potato | nucleus | 51.89 | 52.38 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 17.22 | 51.41 |
| Solyc10g050860.1.1 | Tomato | nucleus | 51.42 | 50.93 |
| Zm00001d013812_P001 | Maize | nucleus | 48.35 | 50.49 |
| CDY16528 | Canola | nucleus | 50.0 | 50.0 |
| CDY32840 | Canola | nucleus | 49.53 | 49.88 |
| CDY28101 | Canola | nucleus | 50.0 | 49.42 |
| CDY29341 | Canola | nucleus | 48.82 | 49.4 |
| CDY50959 | Canola | nucleus | 50.0 | 49.3 |
| CDY68866 | Canola | nucleus | 48.11 | 49.16 |
| AT3G19130.1 | Thale cress | nucleus | 49.76 | 48.51 |
| Zm00001d010739_P001 | Maize | mitochondrion | 14.15 | 48.39 |
| CDY22988 | Canola | nucleus | 47.64 | 48.1 |
| CDX92304 | Canola | nucleus | 47.88 | 47.88 |
| CDY18570 | Canola | nucleus | 48.82 | 47.7 |
| Bra022389.1-P | Field mustard | nucleus | 47.88 | 47.65 |
| CDX82310 | Canola | nucleus | 46.23 | 47.57 |
| Bra001735.1-P | Field mustard | nucleus | 46.23 | 47.57 |
| CDX95462 | Canola | nucleus | 48.58 | 47.47 |
| CDX99265 | Canola | nucleus | 47.41 | 47.41 |
| Zm00001d026346_P002 | Maize | extracellular | 47.17 | 46.73 |
| Bra040663.1-P | Field mustard | nucleus | 40.8 | 46.51 |
| AT1G49600.3 | Thale cress | nucleus | 47.64 | 44.89 |
| Zm00001d002244_P003 | Maize | nucleus | 47.17 | 44.64 |
| Bra037538.1-P | Field mustard | nucleus | 41.04 | 43.18 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 45.75 | 42.54 |
| Zm00001d021149_P001 | Maize | cytosol | 16.27 | 41.82 |
| Zm00001d021633_P006 | Maize | nucleus | 45.28 | 41.29 |
| Zm00001d007929_P002 | Maize | nucleus | 34.67 | 40.95 |
| Zm00001d006496_P004 | Maize | nucleus | 45.75 | 35.73 |
| Zm00001d016252_P001 | Maize | nucleus | 27.83 | 31.38 |
| Bra014216.1-P | Field mustard | nucleus | 42.22 | 31.29 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 16.27 | 25.75 |
| Zm00001d026528_P001 | Maize | plastid | 12.74 | 24.55 |
| Zm00001d027869_P002 | Maize | nucleus | 41.98 | 23.33 |
| Zm00001d031525_P004 | Maize | nucleus | 24.76 | 22.53 |
| Zm00001d048824_P004 | Maize | nucleus | 22.64 | 21.48 |
| Zm00001d049759_P003 | Maize | nucleus | 21.46 | 19.87 |
| Zm00001d026522_P001 | Maize | nucleus | 10.61 | 18.44 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 15.33 | 18.21 |
| Zm00001d032807_P001 | Maize | nucleus | 15.09 | 17.83 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 21.93 | 14.26 |
| Zm00001d046487_P001 | Maize | cytosol | 21.46 | 14.15 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 21.23 | 13.8 |
| Zm00001d005276_P007 | Maize | cytosol | 21.23 | 13.76 |
| Zm00001d019824_P004 | Maize | cytosol | 21.23 | 13.72 |
| Zm00001d047790_P001 | Maize | plastid | 20.75 | 11.97 |
Protein Annotations
| EntrezGene:100193409 | MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:A0A1D6ERI6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM22350.1 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0002216408 | EnsemblPlantsGene:Zm00001d005912 | EnsemblPlants:Zm00001d005912_P001 | EnsemblPlants:Zm00001d005912_T001 |
| SEG:seg | : | : | : | : | : |
Description
Polyadenylate-binding protein RBP47B
Coordinates
chr2:+:192531480..192536267
Molecular Weight (calculated)
45498.3 Da
IEP (calculated)
6.678
GRAVY (calculated)
-0.374
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MQAAAVTVNG AGDVQKPQQQ PMVVGAPPPA AMVPPHWVAI PMPPHPMAPP QFAAAQFVPF HAVVQSPQLA APVPAVVLGS PAPHQAGQEE NKTIWVGDLH
101: FWMDENYLHN CFGYTGEVVA IKVIRNKQTG QSEGYGFVEF YSHAAAERVL EGFSGHIMPN TDQPFRLNWA SFSMGDRRSD VASDHSIFVG DLASDVNDAT
201: LLEVFSSRYS SVKGAKVVID ANTGRSKGYG FVRFGDDSEK THAMTEMNGV YCSSRPMRIG PATPRKSSGT SGSNGSSARP DGGDLTNTTV FVGGLDPDVS
301: EEDLRQAFSQ YGEISSVKIP VGKQCGFVQF AQRKNAEDAL QGLNGSTIGK QAVRLSWGRN PANKQFRGDN GNMQWKNGGV YYAAPPFYNG GYGYPAAAPF
401: PDPGMYAAPA YGAYPFYGNQ QQVS
101: FWMDENYLHN CFGYTGEVVA IKVIRNKQTG QSEGYGFVEF YSHAAAERVL EGFSGHIMPN TDQPFRLNWA SFSMGDRRSD VASDHSIFVG DLASDVNDAT
201: LLEVFSSRYS SVKGAKVVID ANTGRSKGYG FVRFGDDSEK THAMTEMNGV YCSSRPMRIG PATPRKSSGT SGSNGSSARP DGGDLTNTTV FVGGLDPDVS
301: EEDLRQAFSQ YGEISSVKIP VGKQCGFVQF AQRKNAEDAL QGLNGSTIGK QAVRLSWGRN PANKQFRGDN GNMQWKNGGV YYAAPPFYNG GYGYPAAAPF
401: PDPGMYAAPA YGAYPFYGNQ QQVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.