Factsheet for Zm00001d025801_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007279_P001
Zm00001d020113_P001
Zm00001d023987_P001
Zm00001d031707_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	Zm00001d007279_P001	AT2G43970.1	21798944
AT4G34110.1	Zm00001d020113_P001	AT2G43970.1	21798944
AT4G34110.1	Zm00001d023987_P001	AT2G43970.1	21798944
AT4G34110.1	Zm00001d031707_P001	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12460	Sorghum	plastid	96.47	94.73
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	94.63	94.63
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	79.45	84.78
Os04t0504800-01	Rice	plasma membrane	84.82	83.92
TraesCS2A01G359000.1	Wheat	cytosol	84.05	82.41
TraesCS2B01G378400.1	Wheat	nucleus	83.9	82.26
TraesCS2D01G358000.1	Wheat	cytosol	83.74	82.23
VIT_18s0001g10170.t01	Wine grape	cytosol	70.71	72.03
GSMUA_Achr4P09890_001	Banana	cytosol	71.32	71.32
GSMUA_AchrUn_...	Banana	cytosol	71.17	71.17
GSMUA_Achr9P00990_001	Banana	cytosol	70.55	70.66
KRH15385	Soybean	nucleus	69.63	69.63
KRH70673	Soybean	nucleus	69.02	69.44
KRH50336	Soybean	cytosol	68.86	68.97
KRH05656	Soybean	endoplasmic reticulum, nucleus	68.86	68.65
VIT_07s0031g00210.t01	Wine grape	cytosol	68.71	68.5
CDY51045	Canola	cytosol	65.95	65.85
Bra018797.1-P	Field mustard	cytosol	65.95	65.85
CDY62723	Canola	cytosol	62.12	65.64
CDY51957	Canola	cytosol, plastid	62.27	65.59
CDY54068	Canola	cytosol	65.64	65.54
Bra034603.1-P	Field mustard	cytosol, plastid	62.12	65.43
Bra011488.1-P	Field mustard	cytosol, plastid	61.2	65.09
CDX69025	Canola	nucleus, plastid	60.74	64.81
KRH52023	Soybean	cytosol, endoplasmic reticulum	62.58	64.76
AT4G34110.1	Thale cress	cytosol	62.42	64.71
KRH61326	Soybean	cytosol, endoplasmic reticulum	62.27	64.44
Zm00001d005276_P007	Maize	cytosol	64.57	64.37
CDX89664	Canola	cytosol	60.58	64.33
CDX75397	Canola	nucleus, plastid	60.74	64.29
CDX71223	Canola	cytosol	62.88	64.26
AT1G49760.1	Thale cress	cytosol	65.64	63.79
Zm00001d019824_P004	Maize	cytosol	63.8	63.41
Bra013104.1-P	Field mustard	cytosol	59.66	63.15
CDY67364	Canola	nucleus	28.22	62.8
CDY36634	Canola	nucleus	60.74	61.02
Bra015220.1-P	Field mustard	cytosol	53.37	60.21
CDX79296	Canola	plastid	16.56	59.02
CDY67365	Canola	plastid	26.38	58.9
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	69.48	57.56
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	54.91	55.25
PGSC0003DMT400012508	Potato	nucleus	9.97	52.42
Bra022413.1-P	Field mustard	cytosol	29.91	43.72
Zm00001d046487_P001	Maize	cytosol	41.72	42.3
CDX92325	Canola	nucleus	20.4	41.3
CDX91689	Canola	nucleus	15.64	33.44
Zm00001d047790_P001	Maize	plastid	36.66	32.52
Zm00001d014094_P002	Maize	extracellular, plasma membrane	16.26	29.69
Zm00001d032807_P001	Maize	nucleus	15.95	28.97
Zm00001d021149_P001	Maize	cytosol	6.13	24.24
Zm00001d013812_P001	Maize	nucleus	14.57	23.4
Zm00001d026346_P002	Maize	extracellular	15.34	23.36
Zm00001d026528_P001	Maize	plastid	7.52	22.27
Zm00001d007929_P002	Maize	nucleus	12.12	22.01
Zm00001d009512_P001	Maize	mitochondrion	4.45	21.97
Zm00001d002244_P003	Maize	nucleus	15.03	21.88
Zm00001d048824_P004	Maize	nucleus	14.57	21.25
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	13.8	21.23
Zm00001d020748_P002	Maize	plasma membrane	13.96	21.02
Zm00001d010739_P001	Maize	mitochondrion	3.99	20.97
Zm00001d031525_P004	Maize	nucleus	14.88	20.82
Zm00001d049416_P001	Maize	extracellular, nucleus	14.42	20.61
Zm00001d049759_P003	Maize	nucleus	13.96	19.87
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	4.29	19.72
Zm00001d025551_P002	Maize	plastid	13.04	18.81
Solyc06g062680.1.1	Tomato	cytosol	15.18	18.64
Zm00001d021633_P006	Maize	nucleus	13.19	18.49
Zm00001d050838_P001	Maize	plastid	12.12	18.37
Zm00001d026522_P001	Maize	nucleus	6.44	17.21
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	12.42	17.09
Zm00001d006496_P004	Maize	nucleus	13.19	15.84
Zm00001d016252_P001	Maize	nucleus	7.21	12.5
Zm00001d027869_P002	Maize	nucleus	12.88	11.01
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	4.14	10.07

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	UniProt:A0A1D6J9R4	ProteinID:AQK44642.1	ProteinID:AQK44646.1
ProteinID:AQK44647.1	ProteinID:AQK44649.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF678	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0004DEA7A6	EnsemblPlantsGene:Zm00001d025801	EnsemblPlants:Zm00001d025801_P005	EnsemblPlants:Zm00001d025801_T005
SEG:seg	:	:	:	:	:

Description

Polyadenylate-binding protein 2

Coordinates

chr10:-:130013569..130019636

Molecular Weight (calculated)

71301.4 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.369

Length

652 amino acids

Sequence
(BLAST)

001: MSAQVAVVPN GGPGAVPAVV SPGAVGVAQP LPTTSLYVGD LEGAVSDSQL YELFSQAGQV VSVRVCRDVT SRRSLGYAYV NYSNPLDAAR ALEVLNFAAL
101: NNKPIRVMYS NRDPSSRRSG SANIFIKNLD KTIDNKTLHE TFSSFGTILS CKVAVDEAGQ SKGFGFVQYD KEEAAQNAIK SLNGMLINDK PVFVGPFVRK
201: QERDHSFDKT KFNNVFVKNL SESTTKEDLL KIFGEYGDIT SAVVMIGMDG KSRCFGFINF ENPDAASHAV QELNGKKIND KEWYVGRAQK KSEREMELKR
301: RFEQSLKDAA DKYQGLNLYL KNLDDSIGDD QLCELFSNFG KITSYKVMRD QNGLSKGSGF VAFSTREEAS QALTEMNGKM ISGKPLYVAF AQRKEDRKAM
401: LQAQFSQMRP AVPMTPTLAP RLPMYSPMAP QQLFYGQAPP AMMPPQPGFA FQQQLVPGMR PGGPHMPNYY VPVVQQGQQG PRPGIRRGAG AQGQQPVPPF
501: QQQILPRGRM YRYPTGRNMP EAPAMPGVAG GMIQAYDMGG FPVRDAALSP AAQIGTLTSA LANANPEQQR TILGENLYPL VEQLEPNQAA KVTGMLLEMD
601: QTEVLHLLES PDALKSKVAE AMDVLRNVAH QQNPNLPTSQ LAALSLTEGI MS

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.