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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • mitochondrion 1
  • cytosol 2
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_09s0002g07980.t01 Wine grape cytosol 8.29 48.53
EES15258 Sorghum nucleus 50.5 46.0
Zm00001d031707_P001 Maize nucleus 47.74 44.19
TraesCS7D01G269000.1 Wheat nucleus 34.42 34.86
TraesCS7B01G166700.1 Wheat nucleus 34.42 34.86
TraesCS7A01G265700.1 Wheat nucleus 33.42 33.84
Os08t0542900-01 Rice nucleus 34.67 32.32
HORVU7Hr1G056460.1 Barley nucleus 31.16 31.79
VIT_05s0094g01400.t01 Wine grape mitochondrion 24.87 30.46
GSMUA_Achr3P19230_001 Banana nucleus 28.89 25.27
GSMUA_Achr6P18240_001 Banana nucleus 29.15 25.27
Zm00001d019729_P001 Maize nucleus 5.28 23.33
GSMUA_Achr2P11420_001 Banana mitochondrion 28.89 23.33
Zm00001d007279_P001 Maize nucleus 27.39 23.19
CDY17896 Canola nucleus 25.13 22.08
Solyc08g015650.2.1 Tomato nucleus 24.62 21.49
KRG97304 Soybean nucleus 24.12 20.51
Solyc12g019000.1.1 Tomato nucleus 24.37 20.51
CDX79791 Canola nucleus 25.63 20.4
KRH69036 Soybean nucleus 24.37 20.38
PGSC0003DMT400064931 Potato nucleus 23.62 20.22
Bra004795.1-P Field mustard nucleus 24.87 20.0
AT2G43970.1 Thale cress nucleus 25.13 18.35
PGSC0003DMT400075259 Potato nucleus 21.86 16.8
Solyc12g096640.1.1 Tomato nucleus, plastid 21.61 16.76
Zm00001d023987_P001 Maize nucleus 20.6 16.73
Zm00001d018613_P004 Maize nucleus 20.85 16.44
Zm00001d032397_P001 Maize nucleus 16.08 15.5
Zm00001d043418_P136 Maize nucleus 14.82 12.83
Protein Annotations
EnsemblPlants:Zm00001d020113_P001EnsemblPlants:Zm00001d020113_T001EnsemblPlantsGene:Zm00001d020113Gene3D:1.10.510.10Gene3D:3.30.70.330GO:GO:0003674
GO:GO:0003676GO:GO:0005488InterPro:IPR012677InterPro:Kinase-like_dom_sfInterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sf
PANTHER:PTHR22792PANTHER:PTHR22792:SF54ProteinID:ONM54297.1SEG:segSUPFAM:SSF54928SUPFAM:SSF56112
UniParc:UPI000843A533UniProt:A0A1D6I274MapMan:50.2.7:::
Description
La-related protein 6B
Coordinates
chr7:-:93454297..93459551
Molecular Weight (calculated)
43428.2 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.264
Length
398 amino acids
Sequence
(BLAST)
001: MATFGDGGAA LIGWIKTSSV ESENVSKALY ETIGKLSIHK EEARLIGQLC SGMLANLIGC CRERGCCNLY FVQSRIVVAE NLPEDQKHQT LMKIFSAVGN
101: VKSIRTCYPQ DISLAAANKT SRIEMIFANK LHSFVEYSTV GDAEKAVAEF GGGGNWREGI RVRSLLGCLK HGLGQGRKGG DEEYAADEDG PDTTDHPRDF
201: GTDVTAQISE AHFDHQAEDG THDKGGMRQQ GRGRGRGGRG RGRGQHYGHN SRDGHHPIGT PPSEHPAVLK PPLGPRITDG TKGFVFKILV LNIFLVNGSS
301: YCCGSLQQVT RHMRLPAVLL CLLVINNKCY DGAKGDLCSC GVIFFVLMAG YLPFKDSNLM SLYKKIFKAD FSCHPGSPQV QRSSSRRYLI LMLTLCLD
Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
Arabidopsis Description
LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.