Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Zm00001d003106_P003 | |
Zm00001d005276_P007 | |
Zm00001d019824_P004 | |
Zm00001d025801_P005 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_09s0002g07980.t01 | Wine grape | cytosol | 8.29 | 48.53 |
EES15258 | Sorghum | nucleus | 50.5 | 46.0 |
Zm00001d031707_P001 | Maize | nucleus | 47.74 | 44.19 |
TraesCS7D01G269000.1 | Wheat | nucleus | 34.42 | 34.86 |
TraesCS7B01G166700.1 | Wheat | nucleus | 34.42 | 34.86 |
TraesCS7A01G265700.1 | Wheat | nucleus | 33.42 | 33.84 |
Os08t0542900-01 | Rice | nucleus | 34.67 | 32.32 |
HORVU7Hr1G056460.1 | Barley | nucleus | 31.16 | 31.79 |
VIT_05s0094g01400.t01 | Wine grape | mitochondrion | 24.87 | 30.46 |
GSMUA_Achr3P19230_001 | Banana | nucleus | 28.89 | 25.27 |
GSMUA_Achr6P18240_001 | Banana | nucleus | 29.15 | 25.27 |
Zm00001d019729_P001 | Maize | nucleus | 5.28 | 23.33 |
GSMUA_Achr2P11420_001 | Banana | mitochondrion | 28.89 | 23.33 |
Zm00001d007279_P001 | Maize | nucleus | 27.39 | 23.19 |
CDY17896 | Canola | nucleus | 25.13 | 22.08 |
Solyc08g015650.2.1 | Tomato | nucleus | 24.62 | 21.49 |
KRG97304 | Soybean | nucleus | 24.12 | 20.51 |
Solyc12g019000.1.1 | Tomato | nucleus | 24.37 | 20.51 |
CDX79791 | Canola | nucleus | 25.63 | 20.4 |
KRH69036 | Soybean | nucleus | 24.37 | 20.38 |
PGSC0003DMT400064931 | Potato | nucleus | 23.62 | 20.22 |
Bra004795.1-P | Field mustard | nucleus | 24.87 | 20.0 |
AT2G43970.1 | Thale cress | nucleus | 25.13 | 18.35 |
PGSC0003DMT400075259 | Potato | nucleus | 21.86 | 16.8 |
Solyc12g096640.1.1 | Tomato | nucleus, plastid | 21.61 | 16.76 |
Zm00001d023987_P001 | Maize | nucleus | 20.6 | 16.73 |
Zm00001d018613_P004 | Maize | nucleus | 20.85 | 16.44 |
Zm00001d032397_P001 | Maize | nucleus | 16.08 | 15.5 |
Zm00001d043418_P136 | Maize | nucleus | 14.82 | 12.83 |
Protein Annotations
EnsemblPlants:Zm00001d020113_P001 | EnsemblPlants:Zm00001d020113_T001 | EnsemblPlantsGene:Zm00001d020113 | Gene3D:1.10.510.10 | Gene3D:3.30.70.330 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR012677 | InterPro:Kinase-like_dom_sf | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
PANTHER:PTHR22792 | PANTHER:PTHR22792:SF54 | ProteinID:ONM54297.1 | SEG:seg | SUPFAM:SSF54928 | SUPFAM:SSF56112 |
UniParc:UPI000843A533 | UniProt:A0A1D6I274 | MapMan:50.2.7 | : | : | : |
Description
La-related protein 6B
Coordinates
chr7:-:93454297..93459551
Molecular Weight (calculated)
43428.2 Da
IEP (calculated)
8.386
GRAVY (calculated)
-0.264
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFGDGGAA LIGWIKTSSV ESENVSKALY ETIGKLSIHK EEARLIGQLC SGMLANLIGC CRERGCCNLY FVQSRIVVAE NLPEDQKHQT LMKIFSAVGN
101: VKSIRTCYPQ DISLAAANKT SRIEMIFANK LHSFVEYSTV GDAEKAVAEF GGGGNWREGI RVRSLLGCLK HGLGQGRKGG DEEYAADEDG PDTTDHPRDF
201: GTDVTAQISE AHFDHQAEDG THDKGGMRQQ GRGRGRGGRG RGRGQHYGHN SRDGHHPIGT PPSEHPAVLK PPLGPRITDG TKGFVFKILV LNIFLVNGSS
301: YCCGSLQQVT RHMRLPAVLL CLLVINNKCY DGAKGDLCSC GVIFFVLMAG YLPFKDSNLM SLYKKIFKAD FSCHPGSPQV QRSSSRRYLI LMLTLCLD
101: VKSIRTCYPQ DISLAAANKT SRIEMIFANK LHSFVEYSTV GDAEKAVAEF GGGGNWREGI RVRSLLGCLK HGLGQGRKGG DEEYAADEDG PDTTDHPRDF
201: GTDVTAQISE AHFDHQAEDG THDKGGMRQQ GRGRGRGGRG RGRGQHYGHN SRDGHHPIGT PPSEHPAVLK PPLGPRITDG TKGFVFKILV LNIFLVNGSS
301: YCCGSLQQVT RHMRLPAVLL CLLVINNKCY DGAKGDLCSC GVIFFVLMAG YLPFKDSNLM SLYKKIFKAD FSCHPGSPQV QRSSSRRYLI LMLTLCLD
001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE
Arabidopsis Description
LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.