Factsheet for PGSC0003DMT400064931

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400066245

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	PGSC0003DMT400066245	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g015650.2.1	Tomato	nucleus	75.48	76.97
VIT_05s0094g01400.t01	Wine grape	mitochondrion	38.49	55.08
VIT_09s0002g07980.t01	Wine grape	cytosol	7.53	51.47
Os11t0248200-01	Rice	nucleus, plasma membrane	34.84	45.76
KRG97304	Soybean	nucleus	43.66	43.38
PGSC0003DMT400075259	Potato	nucleus	47.1	42.28
CDY17896	Canola	nucleus	41.08	42.16
KRH69036	Soybean	nucleus	42.8	41.81
PGSC0003DMT400066353	Potato	nucleus	25.38	41.7
TraesCS7D01G269000.1	Wheat	nucleus	35.05	41.48
TraesCS7B01G166700.1	Wheat	nucleus	34.84	41.22
Bra004795.1-P	Field mustard	nucleus	43.44	40.81
TraesCS7A01G265700.1	Wheat	nucleus	33.98	40.2
GSMUA_Achr3P19230_001	Banana	nucleus	39.14	40.0
HORVU7Hr1G056460.1	Barley	nucleus	32.47	38.72
GSMUA_Achr6P18240_001	Banana	nucleus	38.06	38.56
CDX79791	Canola	nucleus	40.86	38.0
TraesCS4D01G084200.1	Wheat	nucleus	39.35	37.97
Os08t0542900-01	Rice	nucleus	34.84	37.94
TraesCS4B01G087000.1	Wheat	nucleus	38.92	37.55
TraesCS5B01G121000.2	Wheat	nucleus	37.2	37.28
Zm00001d007279_P001	Maize	nucleus	37.63	37.23
TraesCS5D01G126900.3	Wheat	nucleus	37.2	37.2
TraesCS5A01G115200.1	Wheat	nucleus	36.99	36.99
TraesCS4A01G229400.1	Wheat	nucleus	38.28	36.85
HORVU5Hr1G029110.1	Barley	nucleus	36.56	36.8
HORVU4Hr1G014800.1	Barley	nucleus	38.06	36.65
EES08246	Sorghum	nucleus	37.85	36.59
Zm00001d031707_P001	Maize	nucleus	33.12	35.81
AT2G43970.1	Thale cress	nucleus	41.94	35.78
GSMUA_Achr2P11420_001	Banana	mitochondrion	37.85	35.7
EES15258	Sorghum	nucleus	33.33	35.47
PGSC0003DMT400083493	Potato	nucleus	30.75	34.79
Os12t0225100-01	Rice	nucleus	18.06	34.57
EES16897	Sorghum	nucleus	35.91	34.15
PGSC0003DMT400054517	Potato	nucleus	26.24	30.96
Zm00001d023987_P001	Maize	nucleus	29.89	28.37
Zm00001d020113_P001	Maize	cytosol	20.22	23.62

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:102587503	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030529
GO:GO:1990904	InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM
InterPro:Lupus_La	UniProt:M1CD46	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF05383	EnsemblPlantsGene:PGSC0003DMG400025216	PGSC:PGSC0003DMG400025216
EnsemblPlants:PGSC0003DMT400064931	PRINTS:PR00302	PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf
SMART:SM00715	SUPFAM:SSF46785	SUPFAM:SSF54928	UniParc:UPI000295A5BC	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_006351071.1	SEG:seg	:	:	:	:

Description

Lupus la ribonucleoprotein [Source:PGSC_GENE;Acc:PGSC0003DMG400025216]

Coordinates

chr8:+:8133688..8138601

Molecular Weight (calculated)

50068.8 Da

IEP (calculated)

8.754

GRAVY (calculated)

-0.605

Length

465 amino acids

Sequence
(BLAST)

001: MAMEESAIAV DLLTDSSATS PPSDHTDSCS SPSDLPSPTR LNALAPAFVP RSSSSSASIS PTPSLTDLNQ AGFHPVRNHY VYTPQLQVQY PSPYYGGGVQ
101: EVGGGGAADL DHASASKRGG LTDEAALKIV NQVEFYFSDL NLATTDHLIK HMLKDQEGYV PISVVALFKK IKALIRNHAQ LAQVLRSSTK LVVSEDGMKV
201: KRKIPLTETD LEELQSRIVI AENLPEDHCH QNLMKIFSAV GSVKMIRTCL PQSSNGGASS GSRTAKSDST LHSNKLHTFV EYETAELAER AVVELNDDNW
301: RNALKVRLLL RSSEKSGQAQ GKKAGHESEN FKGDDGSALE VNEKLNEESS HHIDAKSNEL AEEHGSDGQR RGRGQGRGRG KGQGQRRGRP QSHQNNRGGH
401: LGAPISNVNR GSNVRNTLSN INRAGVGQPV LEQSAAPKQS SVPRMPDGTK GFSMGRGKSM AIITM

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.