Factsheet for GSMUA_Achr2P11420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P09890_001
GSMUA_Achr4P20270_001
GSMUA_Achr7P05430_001
GSMUA_Achr8P24250_001
GSMUA_Achr9P00990_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G43970.1	GSMUA_Achr4P09890_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr4P20270_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr7P05430_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr8P24250_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_Achr9P00990_001	AT1G49760.1	21798944
AT2G43970.1	GSMUA_AchrUn_...	AT1G49760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19230_001	Banana	nucleus	57.81	62.64
GSMUA_Achr6P18240_001	Banana	nucleus	53.55	57.52
VIT_05s0094g01400.t01	Wine grape	mitochondrion	36.31	55.08
Os11t0248200-01	Rice	nucleus, plasma membrane	38.74	53.95
VIT_09s0002g07980.t01	Wine grape	cytosol	7.1	51.47
Os12t0225100-01	Rice	nucleus	22.52	45.68
TraesCS7A01G265700.1	Wheat	nucleus	35.5	44.53
TraesCS5B01G121000.2	Wheat	nucleus	41.78	44.4
TraesCS5D01G126900.3	Wheat	nucleus	41.78	44.3
TraesCS4D01G084200.1	Wheat	nucleus	43.0	43.98
TraesCS7B01G166700.1	Wheat	nucleus	34.89	43.77
Zm00001d007279_P001	Maize	nucleus	41.58	43.62
TraesCS7D01G269000.1	Wheat	nucleus	34.69	43.51
HORVU5Hr1G029110.1	Barley	nucleus	40.77	43.51
TraesCS5A01G115200.1	Wheat	nucleus	40.97	43.44
HORVU4Hr1G014800.1	Barley	nucleus	42.39	43.27
TraesCS4B01G087000.1	Wheat	nucleus	41.99	42.95
TraesCS4A01G229400.1	Wheat	nucleus	41.99	42.86
EES08246	Sorghum	nucleus	41.78	42.83
CDY17896	Canola	nucleus	39.15	42.6
EES16897	Sorghum	nucleus	42.19	42.54
HORVU7Hr1G056460.1	Barley	nucleus	33.27	42.05
Os08t0542900-01	Rice	nucleus	36.11	41.69
EES15258	Sorghum	nucleus	36.51	41.19
Zm00001d031707_P001	Maize	nucleus	35.9	41.16
KRG97304	Soybean	nucleus	37.93	39.96
Solyc08g015650.2.1	Tomato	nucleus	36.31	39.25
KRH69036	Soybean	nucleus	37.73	39.08
CDX79791	Canola	nucleus	39.15	38.6
Bra004795.1-P	Field mustard	nucleus	38.13	37.98
PGSC0003DMT400064931	Potato	nucleus	35.7	37.85
Solyc12g019000.1.1	Tomato	nucleus	34.69	36.15
AT2G43970.1	Thale cress	nucleus	37.73	34.13
PGSC0003DMT400075259	Potato	nucleus	34.69	33.01
Solyc12g096640.1.1	Tomato	nucleus, plastid	33.47	32.16
Zm00001d023987_P001	Maize	nucleus	31.85	32.04
GSMUA_Achr4P23770_001	Banana	nucleus	30.43	31.91
Zm00001d020113_P001	Maize	cytosol	23.33	28.89
GSMUA_Achr1P13840_001	Banana	nucleus, plastid	25.56	27.57

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0030529	GO:GO:1990904	EnsemblPlantsGene:GSMUA_Achr2G11420_001	EnsemblPlants:GSMUA_Achr2P11420_001	EnsemblPlants:GSMUA_Achr2T11420_001	InterPro:IPR000504
InterPro:IPR006630	InterPro:IPR012677	InterPro:IPR036388	InterPro:La_HTH	InterPro:La_like_plant_RRM	InterPro:Lupus_La
UniProt:M0S733	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF05383	PRINTS:PR00302	PFscan:PS50102
PFscan:PS50961	PANTHER:PTHR22792	PANTHER:PTHR22792:SF52	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00715
SUPFAM:SSF46785	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000295E526	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G11420_001]

Coordinates

chr2:-:14304992..14312548

Molecular Weight (calculated)

53765.6 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.470

Length

493 amino acids

Sequence
(BLAST)

001: MPPLLAVRHG KTRRCTSYQR RRAALIRWAS SAEKSSMSPS VLPDSIPSRW HCRADAFTAV RFFTFSSSAA LLASVAVFFC AFSSIVGHTF LLFRPAAFMD
101: EEICGGSGIG MEAFAAKGPA CFGPGPSSFE YYGGGGGGGA AGGFGEHEGA HTGDDLDLSS SAGDGLSDEV IQKITKQVEY YFSDANLATT EHLMRFITKD
201: PEGFVPISVV AAFKKIKALV HNNSQLAMAL QTSTKLVVSD DGKKVRRQQP FTKSDMEELQ SRIVMAENLP EDHCYQNLMK IFSSIGSVKT IRTCYPQPSN
301: GAAAVTNRPT KLEMHFGNRL HAFVEYETVE DAEKAVAELN NEKNWRSGLR VRVFPKLLTK HGQGRGRKVH EVEFTGEEDV STLNEKQVED AYHTSEVLHE
401: HESVDSFNDK DGTVRRGRGR SRGGRGRGRG QHLSNNRVGG HAVGTPPSSH HLIHSEREQP VGANKQPPGP RMPDGTRGFT MGRGKPVVPT GTI

Best Arabidopsis Sequence Match ( AT2G43970.1 )
(BLAST)

001: MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP
101: IQPHLVPVQN HHPHHRFHQH HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS VSIDSKTGLP EDSIQKIVNQ
201: VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301: LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA
401: DVEHEEDDAT TSEQQPIEKQ SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ NHNHNGRGNH HHHHHHQVGT
501: QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV MVQAE

Arabidopsis Description

LARP6BLa-related protein 6B [Source:UniProtKB/Swiss-Prot;Acc:O80567]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.