Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr2P11420_001 | |
| GSMUA_Achr3P19230_001 | |
| GSMUA_Achr6P18240_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34110.1 | GSMUA_Achr2P11420_001 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | GSMUA_Achr3P19230_001 | AT2G43970.1 | 21798944 |
| AT4G34110.1 | GSMUA_Achr6P18240_001 | AT2G43970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P09890_001 | Banana | cytosol | 80.03 | 79.91 |
| GSMUA_AchrUn_... | Banana | cytosol | 77.88 | 77.76 |
| VIT_18s0001g10170.t01 | Wine grape | cytosol | 76.04 | 77.34 |
| KRH70673 | Soybean | nucleus | 75.27 | 75.62 |
| VIT_07s0031g00210.t01 | Wine grape | cytosol | 75.88 | 75.54 |
| KRH50336 | Soybean | cytosol | 74.96 | 74.96 |
| KRH15385 | Soybean | nucleus | 74.19 | 74.08 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 74.19 | 73.85 |
| HORVU2Hr1G087390.3 | Barley | cytosol, mitochondrion, nucleus | 68.2 | 72.67 |
| GSMUA_Achr4P20270_001 | Banana | cytosol | 71.43 | 72.32 |
| Os04t0504800-01 | Rice | plasma membrane | 71.58 | 70.71 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 70.66 | 70.55 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 70.51 | 70.4 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 71.28 | 69.77 |
| TraesCS2D01G358000.1 | Wheat | cytosol | 70.97 | 69.58 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 70.97 | 69.47 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 66.97 | 69.21 |
| EES12460 | Sorghum | plastid | 70.35 | 68.98 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 66.51 | 68.73 |
| CDY62723 | Canola | cytosol | 63.75 | 67.26 |
| CDX89664 | Canola | cytosol | 63.29 | 67.1 |
| Bra034603.1-P | Field mustard | cytosol, plastid | 63.75 | 67.04 |
| CDY51957 | Canola | cytosol, plastid | 63.75 | 67.04 |
| CDY67364 | Canola | nucleus | 29.95 | 66.55 |
| AT4G34110.1 | Thale cress | cytosol | 64.21 | 66.45 |
| Bra013104.1-P | Field mustard | cytosol | 62.67 | 66.23 |
| Bra011488.1-P | Field mustard | cytosol, plastid | 62.37 | 66.23 |
| CDX69025 | Canola | nucleus, plastid | 62.06 | 66.12 |
| CDX75397 | Canola | nucleus, plastid | 62.52 | 66.07 |
| CDY54068 | Canola | cytosol | 66.05 | 65.85 |
| CDY51045 | Canola | cytosol | 65.75 | 65.54 |
| Bra018797.1-P | Field mustard | cytosol | 65.75 | 65.54 |
| CDX71223 | Canola | cytosol | 64.21 | 65.52 |
| CDY67365 | Canola | plastid | 28.88 | 64.38 |
| AT1G49760.1 | Thale cress | cytosol | 66.36 | 64.38 |
| CDY36634 | Canola | nucleus | 63.13 | 63.33 |
| Bra015220.1-P | Field mustard | cytosol | 55.61 | 62.63 |
| GSMUA_Achr8P24250_001 | Banana | cytosol, plastid | 61.75 | 62.04 |
| VIT_03s0063g00070.t01 | Wine grape | cytosol, plastid | 74.35 | 61.5 |
| CDX79296 | Canola | plastid | 17.2 | 61.2 |
| PGSC0003DMT400012508 | Potato | nucleus | 10.29 | 54.03 |
| GSMUA_Achr7P05430_001 | Banana | nucleus | 74.65 | 53.76 |
| GSMUA_Achr5P24940_001 | Banana | plastid | 53.15 | 51.95 |
| Bra022413.1-P | Field mustard | cytosol | 30.41 | 44.39 |
| CDX92325 | Canola | nucleus | 20.74 | 41.93 |
| GSMUA_Achr4P00840_001 | Banana | cytosol | 28.57 | 38.43 |
| GSMUA_Achr9P10860_001 | Banana | cytosol | 39.17 | 35.66 |
| CDX91689 | Canola | nucleus | 16.44 | 35.08 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 14.75 | 30.67 |
| GSMUA_Achr10P... | Banana | nucleus | 14.44 | 29.94 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 16.28 | 28.96 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 13.67 | 28.53 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 14.13 | 28.05 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 13.36 | 27.88 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 14.13 | 27.79 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 15.98 | 25.55 |
| GSMUA_Achr10P... | Banana | nucleus | 16.9 | 25.35 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 15.67 | 25.31 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 15.36 | 25.0 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 15.67 | 24.11 |
| GSMUA_Achr9P14120_001 | Banana | nucleus | 14.44 | 23.15 |
| GSMUA_Achr11P... | Banana | nucleus | 15.51 | 22.75 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 14.75 | 22.12 |
| GSMUA_Achr10P... | Banana | mitochondrion | 14.44 | 22.12 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 4.92 | 21.77 |
| Solyc06g062680.1.1 | Tomato | cytosol | 15.82 | 19.4 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 14.59 | 19.15 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | EnsemblPlantsGene:GSMUA_Achr9G00990_001 |
| EnsemblPlants:GSMUA_Achr9P00990_001 | EnsemblPlants:GSMUA_Achr9T00990_001 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 | UniProt:M0TWF6 |
| InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:PABP-dom | InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 |
| PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI000296EA7E | SEG:seg | : | : | : |
Description
Polyadenylate-binding protein 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G00990_001]
Coordinates
chr9:+:727084..737140
Molecular Weight (calculated)
71541.2 Da
IEP (calculated)
7.580
GRAVY (calculated)
-0.484
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQVQPQP PNGMANNGGA AGVNQFPSSS LYVGDLDVNV TDSQLYDLFS QIGQVVSVRV CRDIGTRRSL GYAYVNYNSP VDAARALDAL NFTPLNNKPI
101: RIMYSNRDPS TRRSGAANIF IKNLDKTIDN KALYDTFSVF GNILSCKVAT DPSCQSKGYG FVQFDQEEAA QNAINKLNGM LINDKPVYVG PFLRKQEREN
201: SADKAKFNNV FVKNLSESTT KEDLERIFGK YGKITSAVVM REEDGKSKCF GFVNFENTDA AAQAVQELNG QKFDEKEWYV GKAQKKSERE RELKGRFDQS
301: IKEAADKYQG LNLYLKNLDD DIGDDSLKEL FSEYGTITSC KIMRDPSGAS KGSGFVAFST PEEAARALAD MNGKMINGKP LYVALAQSKE DRRARLQAHF
401: SQMRPVAMTP AIGPRVPMYP PATPGLGQQI FYGQPPHALI PPQPGFGFPQ QHVPGMRPVG APMPNFYLPL VQQGQQTRPG GRRASAGPVQ QTHQPMPLIQ
501: QQMLPRRVFR YPPGRNIPEV PMPGAPGGML SPYDMGSLPI REAAISQPIP TGTLASALAN ANPEQQRTML GESLYPLVDQ LEHDHSAKVT GMLLEMDQTE
601: VLHLLESPEA LKAKVAEAME VLRNASQQHQ HVNAPADQLA ALSLNDGLQV E
101: RIMYSNRDPS TRRSGAANIF IKNLDKTIDN KALYDTFSVF GNILSCKVAT DPSCQSKGYG FVQFDQEEAA QNAINKLNGM LINDKPVYVG PFLRKQEREN
201: SADKAKFNNV FVKNLSESTT KEDLERIFGK YGKITSAVVM REEDGKSKCF GFVNFENTDA AAQAVQELNG QKFDEKEWYV GKAQKKSERE RELKGRFDQS
301: IKEAADKYQG LNLYLKNLDD DIGDDSLKEL FSEYGTITSC KIMRDPSGAS KGSGFVAFST PEEAARALAD MNGKMINGKP LYVALAQSKE DRRARLQAHF
401: SQMRPVAMTP AIGPRVPMYP PATPGLGQQI FYGQPPHALI PPQPGFGFPQ QHVPGMRPVG APMPNFYLPL VQQGQQTRPG GRRASAGPVQ QTHQPMPLIQ
501: QQMLPRRVFR YPPGRNIPEV PMPGAPGGML SPYDMGSLPI REAAISQPIP TGTLASALAN ANPEQQRTML GESLYPLVDQ LEHDHSAKVT GMLLEMDQTE
601: VLHLLESPEA LKAKVAEAME VLRNASQQHQ HVNAPADQLA ALSLNDGLQV E
001: MAQVQLQGQT PNGSTAAVTS APATSGGATA TQFGNTSLYV GDLDFNVTDS QLFDAFGQMG TVVTVRVCRD LVTRRSLGYG YVNFTNPQDA ARAIQELNYI
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
101: PLYGKPIRVM YSHRDPSVRR SGAGNIFIKN LDESIDHKAL HDTFSSFGNI VSCKVAVDSS GQSKGYGFVQ YANEESAQKA IEKLNGMLLN DKQVYVGPFL
201: RRQERDSTAN KTKFTNVYVK NLAESTTDDD LKNAFGEYGK ITSAVVMKDG EGKSKGFGFV NFENADDAAR AVESLNGHKF DDKEWYVGRA QKKSERETEL
301: RVRYEQNLKE AADKFQSSNL YVKNLDPSIS DEKLKEIFSP FGTVTSSKVM RDPNGTSKGS GFVAFATPEE ATEAMSQLSG KMIESKPLYV AIAQRKEDRR
401: VRLQAQFSQV RPVAMQPSVG PRMPVYPPGG PGIGQQMFYG QAPPAMIPPQ PGYGYQQQLV PGMRPGGGPV PSFFMPMVQP QQQRPGGGRR PGGIQHSQQQ
501: NPMMQQQMHP RGRMFRYPQG RGGSGDVPPY DMGNNMPLTI GALASNLSNA TPEQQRTMLG EVLYPLVEQV EAESAAKVTG MLLEMDQTEV LHLLESPEAL
601: KAKVAEAMDV LRSVAAGGAT EQLASLNLS
Arabidopsis Description
PAB2Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:A0A178UWB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.