Factsheet for GSMUA_Achr9P10860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04380.t01	Wine grape	cytosol	56.08	63.25
KRH67800	Soybean	cytosol	52.59	59.49
KRG96088	Soybean	cytosol	51.89	58.33
PGSC0003DMT400021673	Potato	cytosol	50.77	57.8
Solyc10g085750.1.1	Tomato	nucleus	50.07	57.56
PGSC0003DMT400033802	Potato	cytosol	45.73	53.78
KRH19986	Soybean	cytosol	37.06	53.54
KRH32613	Soybean	cytosol	36.22	52.97
Solyc09g008620.1.1	Tomato	cytosol	44.62	52.73
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.48	49.15
TraesCS4A01G099500.1	Wheat	cytosol	42.66	46.78
TraesCS4D01G205700.1	Wheat	cytosol	42.66	46.71
TraesCS4B01G204800.1	Wheat	cytosol	42.38	46.54
HORVU4Hr1G059070.1	Barley	cytosol	42.52	46.48
AT2G36660.1	Thale cress	cytosol, plastid	39.02	45.81
KXG40160	Sorghum	nucleus	43.92	43.55
Zm00001d047790_P001	Maize	plastid	44.06	42.86
GSMUA_AchrUn_...	Banana	cytosol	36.22	39.72
GSMUA_Achr4P20270_001	Banana	cytosol	35.66	39.66
GSMUA_Achr4P00840_001	Banana	cytosol	26.57	39.26
GSMUA_Achr9P00990_001	Banana	cytosol	35.66	39.17
GSMUA_Achr4P09890_001	Banana	cytosol	35.24	38.65
GSMUA_Achr5P24940_001	Banana	plastid	34.69	37.24
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	29.65	32.72
GSMUA_Achr7P05430_001	Banana	nucleus	35.66	28.21
GSMUA_Achr10P...	Banana	nucleus	11.89	27.07
GSMUA_Achr6P10190_001	Banana	nucleus	11.47	26.2
GSMUA_Achr3P06840_001	Banana	nucleus	11.05	25.32
GSMUA_Achr6P29410_001	Banana	nucleus	11.61	25.3
GSMUA_Achr9P15210_001	Banana	nucleus	10.91	25.0
GSMUA_Achr9P24980_001	Banana	cytosol	11.47	24.77
GSMUA_Achr5P20140_001	Banana	nucleus	12.59	24.59
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	12.87	22.6
GSMUA_Achr6P11660_001	Banana	mitochondrion	13.01	21.99
GSMUA_Achr9P14120_001	Banana	nucleus	12.45	21.92
GSMUA_Achr3P01720_001	Banana	mitochondrion	12.03	21.34
GSMUA_Achr8P31320_001	Banana	nucleus	11.89	21.25
GSMUA_Achr10P...	Banana	mitochondrion	12.45	20.94
GSMUA_Achr11P...	Banana	nucleus	12.87	20.72
GSMUA_Achr10P...	Banana	nucleus	12.45	20.51
GSMUA_Achr6P09470_001	Banana	nucleus	4.2	20.41
GSMUA_Achr3P02150_001	Banana	mitochondrion, nucleus	12.31	20.28
GSMUA_Achr2P21780_001	Banana	nucleus, plastid	12.31	17.74

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
EnsemblPlantsGene:GSMUA_Achr9G10860_001	EnsemblPlants:GSMUA_Achr9P10860_001	EnsemblPlants:GSMUA_Achr9T10860_001	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M0TZ95	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf
InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928
SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000296F623	SEG:seg	:	:

Description

Putative Polyadenylate-binding protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G10860_001]

Coordinates

chr9:+:7072144..7078533

Molecular Weight (calculated)

78702.0 Da

IEP (calculated)

8.832

GRAVY (calculated)

-0.294

Length

715 amino acids

Sequence
(BLAST)

001: MAVAETTATA TATVASASAQ PSPMALYVGD LADDVAEGQL VGLFSAVGEL ASVRICKDSV TGRSLGYGYV NYISPHDAMV ALEKLNHTPL NGKPIRVMWS
101: VRHREARNTV IGNLFVKNLS NSVDNGKLYE MFSKFGTILS CKVATDEGGK SKGFGFVQFD SQESANSAIE NLHDSFFDGK TIYVANFIRK SERVSISPEA
201: NFTNLYMKNL DQDITEELIK LKFSEFGKIL SVYIAKDDYG NSKGFGFVNF ESSDCAKRAM EAMNGVQLGT NTLYVARAQK KAERMQVLRR LYEEKRNEQI
301: RKYMASNVYV KNIDDAVDNN ALRERFSEFG NITSAKVMLD EKGRSKGFGF VCYSTPEEAT KAVNSLRGSM FYGKPLYVAI AQRKEERQAQ LQMMYAQRMA
401: GSPAAVLPTG YGPLYYASSG VVSQVPPRQG VMYQPFGIRP GWRPNGFVAP SRPIFQSMPL PAMSNTSRQH RQNRGRMNGN VLPQSGQTNI YMPHLQQANH
501: SVNTAKDLIG QQPISGGRPY TWLEQFRLPV DMGSTEFLDA QKRTADGGGF EGSIDGLRSL DGVPTMVHVQ TMSFTLVSEI LVFNLFFVRS GQAKYVPNGH
601: QHEINNASLT SSGSNSQGTE MLSSMLAAAT PQQQKQILGE RLFPLVEKLK FDLAAKITGM LLEMDNSELL LLLESPESLA AKVEEAVQVL KLSNATVGGQ
701: ENIHSNYLTS NVTVN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.